Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05446 ATGGAAGCATTATGTGAGTTTTGTGGGGTTGCAAGAGCTGTGGTTTTCTGCAAGGCAGATTCTGCTCGTCTCTGTTTGCATTGTGATGAATGTGTACACTCTGCCAATTCTTTGTCTCGGAGGCACCCTCGTTCTCTTCTCTGTGATAAGTGCAATTTTGAGTCAGCAACTGTCCTCTGCATGGATCATAAATGGTCTCTTTGTCAAGTTTGTGATTGGAATACAAATGAATGTTCAGTATTGGGACATAGGTGTTTGGCATTGAATTTCTACACTGGTTGTCCCTCTTTGGATGAGTTTTATAGGATTTGGCCCCATGTGGTTGATGCTAATTCCTTATGTGGTGGTTTGGAATCACTTGGTACATTGCCTAAAAATGATAGCTGCACTAGCAAGCATTTGGAGCAACTTGATGAGGTTGGTTCCTCTGGTTTGGGGAGTGACATGTTGAATGAAGTAGAACCATGTGTCAAATATGAACCTTGGATGGAGCAATCTCCCATCATTCCTTCAAATCCAAACTACACACAGTATTGCAAAGATGAAGCATTTTTCTTTCCTCAAGACTCAAACCAACCAAATCTGCAGGGATGTACTATTTTCAAGGATCTAGGATTTCATGAGGAGAATGGTCCTTGTGAAGGTCTCAATGTGGATGATGTTCAATTAAACTTTGAAGAGGCTGATGAAATATTTGGCTGCTCTCAAAGTGCCTCAAGATACCACCTTGAAGATGGAGAAATAGATTGTCTATTAATGGATAGGAACATACCAGTCACAAAATCCAGTAGTCTTATTGAGAGTGCCATGGAGGCATCATCATCAGTCCAACAAGATTGTGTGGCTTTTCCATCATCCGGGGCTGGTGGGGCTGCTAGTGTAATGCAGACCATCAACAGTAGTGCAAATTGTGCACTTATGACTCCTAGCTGCAACAGAAACATCAACCTGGGATTTCCTCAGGGCCAAATTCCTTCAAGCATGTCAATTCAAATACCCAACATTACGGTTGAAAATAATGCTACTGAATATCAAGATTGTGGGTTATCGCCATTGTTTCTGTCAGGTGAATCCCATTGGGAACCAAATTTGGAGGTTACATGCCCTCAAGCAAGGGATAAAGCTAAAATGAGATACAATGAGAAAAAGAAAACTCGAACGTTTGGTAAGCAAATTAGATATGCATCTCGCAAAGAAAGGGCTGATACAAGAAAACGTGTGAAAGGTAGATTTGTTAAAGCAGGTGAAGCATATGATTATGATCCTCTTGAAACAAAGGAGACCTAA 1287 0.411 MEALCEFCGVARAVVFCKADSARLCLHCDECVHSANSLSRRHPRSLLCDKCNFESATVLCMDHKWSLCQVCDWNTNECSVLGHRCLALNFYTGCPSLDEFYRIWPHVVDANSLCGGLESLGTLPKNDSCTSKHLEQLDEVGSSGLGSDMLNEVEPCVKYEPWMEQSPIIPSNPNYTQYCKDEAFFFPQDSNQPNLQGCTIFKDLGFHEENGPCEGLNVDDVQLNFEEADEIFGCSQSASRYHLEDGEIDCLLMDRNIPVTKSSSLIESAMEASSSVQQDCVAFPSSGAGGAASVMQTINSSANCALMTPSCNRNINLGFPQGQIPSSMSIQIPNITVENNATEYQDCGLSPLFLSGESHWEPNLEVTCPQARDKAKMRYNEKKKTRTFGKQIRYASRKERADTRKRVKGRFVKAGEAYDYDPLETKET. 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05446 428 SMART bboxneu5 1 47 IPR000315 GO:0008270
Seca4g05446 428 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca4g05446 428 Pfam CCT motif 372 414 IPR010402 GO:0005515
Seca4g05446 428 ProSiteProfiles CCT domain profile. 372 414 IPR010402 GO:0005515
Seca4g05446 428 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 417 - -
Seca4g05446 428 ProSiteProfiles Zinc finger B-box type profile. 43 88 IPR000315 GO:0008270
Seca4g05446 428 CDD Bbox1_BBX-like 4 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05446 Seca-Chr4 102728801 102732537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05446 1 422 C2C2-CO-like Transcription Factor Family AT3G21880 40.826 1.06e-94 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca4g05446 CCT 1.6e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05446 - - gmx:100804738 643.654