Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05445 ATGTCCCGCAAAGTGAACTTAGTCGAAGAAATAGATCGTACTAAAGAATCTTGGAAGCTTGCCATTAGAGTGACCAATGTGTGGCCTTCAGAAAATTTCATGGATATGATTTTCATGGATGAAAAGGGAGGCAAAATCCAAGCATCATTGAAAGAAATTGATTTACGAAAATTAAATGTTGTGCTAGAAGAAGGCTACACTTATAGTATAAAAAATTTGGAAGTCAAAGAGAATACTGGTGAGTATAAGTTGTGCAACCACCTCTATAAGGTTGGATTCATGAAAGGTACCCATGTGCAGCAATGTGATTTCCCTCAAATTCCTCGAAATGTATATCATTTGACAAGCTTTGAGGATATAATCAAAGGAAATGCTTCCACTCATGTGTTAGTAGATGTAATTGGCGAGTTTACTGACATTCAACAACACGTAGATGAAAGCATGCCAAAAAAGTTGGTCATTATCATGCAAGATCAAAGGGGCCACACTATAAGCTGGACTTTGTGGGAGGAGTATGCAAGTCAGGTGTTATCTTTCCTAGGAACTCATGAAGGTGGCCCAATCATCATGCTACTTAGTCTTGCCAAGATAAAGGAAGCTAAGGGAAACTACCTAGTTACTGTTCAAAATACTAAGGTACACTCAAGGTTTTACATCAATGAAGACATTGATGAGATCAATAAATTCAAAAGCAGGAAATATTTTGTGTCATTGTTGGGAAAATAG 726 0.3719 MSRKVNLVEEIDRTKESWKLAIRVTNVWPSENFMDMIFMDEKGGKIQASLKEIDLRKLNVVLEEGYTYSIKNLEVKENTGEYKLCNHLYKVGFMKGTHVQQCDFPQIPRNVYHLTSFEDIIKGNASTHVLVDVIGEFTDIQQHVDESMPKKLVIIMQDQRGHTISWTLWEEYASQVLSFLGTHEGGPIIMLLSLAKIKEAKGNYLVTVQNTKVHSRFYINEDIDEINKFKSRKYFVSLLGK. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05445 241 Pfam Domain of unknown function DUF223 36 130 IPR003871 -
Seca4g05445 241 Gene3D - 106 235 IPR012340 -
Seca4g05445 241 SUPERFAMILY Nucleic acid-binding proteins 8 103 IPR012340 -
Seca4g05445 241 Gene3D - 3 102 IPR012340 -
Seca4g05445 241 CDD RPA1_DBD_B_like 132 234 - -
Seca4g05445 241 CDD RPA1_DBD_A_like 19 99 - -
Seca4g05445 241 SUPERFAMILY Nucleic acid-binding proteins 112 232 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05445 Seca-Chr4 102684736 102686898 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05445 1 231 Core DNA Replication Machinery Family AT5G08020 23.715 3.18e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05445 - - lang:109325982 207.994