Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05435 ATGCCGTTGGGGCCGCACCACCTTCAACCACCGCAACTAGCACCTCTGCCGCTACCGCCACCTCAGCAGCAACAGCTGCAGTTGTTGCCACAACCGCAATCCGAGAATGACCCACTGAAGGTGGTGACTACCGACGTCTCTAGCACGAAGACCGATAAGGACATGTCAGCTAGTGTCTCGAAGGGTAATGATGCAGTCACTGGTCACATAATATCAACCACAATCGGAGGGGAAAATGGTGAACCTAAACAGACCATCAGTTACATGGCTGAACGTGTTGTTGGCACTGGATCATTTGGAATTGTTTTCCAGGCAAAGTGCTTGGAGACTGGGGAGGCAGTTGCTATAAAGAAGGTCCTGCAGGACAAGCGGTACAAAAATCATGAATTGCAGTTAATGCGCGTGATGGATCATCCAAATGTAATTTCCCTGAAGCATTGCTTCTTCTCTACAACAAGCAAAGATGATCTTTTTTTTAACTTGGTCATGGAATATGTCCCTGAGACAATGTACCGAGTTCTAAAGCACTACAATAGCATCAACCAAAGAATGCCCCTAATCTATGTGAAATTATATACATATCAAATCTTTAGGGCACTAGCATATATCCATACTGTACCTGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATATTTTGGTTGATCCCCTCACTCACCAAGTTAAGCTTTGTGATTTTGGGAGCGCAAAAGTTTTGGTCAAGGGTGAATCAAACATTTCGTACATAAGTTCGCGATACTATAGGGCCCCAGAACTAATATTTGGAGCGACAGAATATACAACTTCTATTGATATCTGGTCAGCAGGTTCTGTCCTTCCGGAACTTCTTCTAGGCCAGCCACTGTTCCGAGGAGAAAATCAGGTGGATCAACTTGTAGAGATTATTAAGGTTCTTGGTACTCCAACTCGAGAAGAAATTCGTTGCATGAACCCTAATTATACAGTTTTTCAATTCCCGCATATAAAAGCTTATCCTTGGCATAAGGTTTTTCACAAGCGAATGTCTCTTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCAAGTCTTCGTTACCGTGCACTGGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGTGAGCCCAATGCCCGACTACCTAATGGTCGTCCGCTGCCTCCCCTTTTCAACTTTAAACAAGAATTAGCTGGAGCACCCCCTGAAGTGGTCCACAAACTCATCCCAGACCATGTCAGGCAGCAAACTGGTCTTGGCTTCCCATATCCGGACAGTACATAA 1287 0.4483 MPLGPHHLQPPQLAPLPLPPPQQQQLQLLPQPQSENDPLKVVTTDVSSTKTDKDMSASVSKGNDAVTGHIISTTIGGENGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDKRYKNHELQLMRVMDHPNVISLKHCFFSTTSKDDLFFNLVMEYVPETMYRVLKHYNSINQRMPLIYVKLYTYQIFRALAYIHTVPGVCHRDVKPQNILVDPLTHQVKLCDFGSAKVLVKGESNISYISSRYYRAPELIFGATEYTTSIDIWSAGSVLPELLLGQPLFRGENQVDQLVEIIKVLGTPTREEIRCMNPNYTVFQFPHIKAYPWHKVFHKRMSLEAIDLASRLLQYSPSLRYRALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELAGAPPEVVHKLIPDHVRQQTGLGFPYPDST. 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05435 428 FunFam Shaggy-related protein kinase kappa 168 415 - -
Seca4g05435 428 Gene3D Transferase(Phosphotransferase) domain 1 168 415 - -
Seca4g05435 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Seca4g05435 428 CDD STKc_GSK3 83 375 IPR039192 -
Seca4g05435 428 SMART serkin_6 88 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05435 428 FunFam Glycogen synthase kinase-3 beta 72 167 - -
Seca4g05435 428 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 52 417 - -
Seca4g05435 428 MobiDBLite consensus disorder prediction 1 38 - -
Seca4g05435 428 SUPERFAMILY Protein kinase-like (PK-like) 87 396 IPR011009 -
Seca4g05435 428 MobiDBLite consensus disorder prediction 1 26 - -
Seca4g05435 428 ProSitePatterns Protein kinases ATP-binding region signature. 94 118 IPR017441 GO:0005524
Seca4g05435 428 ProSiteProfiles Protein kinase domain profile. 88 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05435 428 Pfam Protein kinase domain 88 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05435 428 Gene3D Phosphorylase Kinase; domain 1 73 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05435 Seca-Chr4 102506045 102510774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05435 92 394 MAP Kinase Gene Family AT3G59790 33.962 3.52e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca4g05435 Pkinase 2.8e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05435 K14502 - qsu:111995841 691.034