Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05434 ATGGAGCCCATTTGCCCTATTGGCTCGCGTTGTGCCACTGAAATCTCTTCTCTTCTCACTCCTCCCTCTCCTCTGCAAGTTCAGGAATATTATCACAACCTTTTGTCTGCAAGGCAGTGCAGTGGCATCACAGTCAAACATGATGGGAACTTTGGAAAGGGTGTATATGCTACCATGGACTTTAAAGAGGGGGGACTTGTTCTGAAGGATCACATGCTTGTGGGGGCTCAACACTCTTTCAACAAGATTGATTGTTTTGTCTGTAGCTTCTGCTTTCGTTTTATTGGTTCCATAGAACTTCAAATTGGAAGGAGGCTTTACTTGCAAGAATTAAGGGCCAATGAGGGTCATGGTTGTGATGTGGGAAACTTTTCAGGCTCTTCTAAAGGCTGCCATGAAATGGATTCATCTGATGAAGAGGAGAGCACTGAGCAATGTGGTTCTGGTAGTTCCAAAACTAAAGTTCCTCTCCCTGAAGGTGTTGTGGAATCATTGATGAATGGCCAGTTGATATTGCCCTACTCTGAGAAGTTCTCTTTGCCGCCAGCTGTTCCATGCCCTGGTGGATGTGGAGAAGCTTACTATTGCAGCACGTCATGCGCAGAGGCTGATTGGGAATCCTCCCATTCTTTACTCTGTACTGGCGAGGGTTCTGATACTGCACCTAGGGGGGCACTCCTCAAATTCATCAAACATGCTAATGAAACAAATGATATATTCCTCCTTGCTGCAAAGGCAATTTCTTCTACCATATTAAGGTACCGCAGGATAAAAGCAAACTGTCTTGAAGAGCAAGTAAAATACGAAACATCCTGTGATCCAAACCAATGTAATCTCTCTCTTCTTTTGGAAGCTTGGAGGCCTATATCAATGGGACACAAGAAAAGGTGGTGGGACTGCATTGCATTGCCAGATGATATTGATTCTTCTGATGAAGCTTCATTCAGGATGCAAATAAAAGAGCTGGCATTCGAGTCTCTCCAACTTCTTAAGACAGCTATATTTGACAAGGAATGTGAGCCATTATTCTCCCTTGAAATTTATGGACACATCATTGGCATGTTTGAGCTGAATAATCTCGATTTGGTTGTAGCTTCTCCTGTGGAGGATTACTTTTTATACATTGATGATATGACAGATCCTGATAAGGAAGAAGCTGAGAAAATTACACAACCAATTCTGGACGCTCTTGGTGAAGACTATTCTATTTGTTGTCAAGGAACTGCATTTTTTCCTCTGCAAAGCTGCATGAACCATTCCTGTTGTCCTAACGCCAAAGCTTTCAAAAGAGATGAGGATAGAGATGGCCAAGCAACAATAATTGCGCTGAGGTCCATTTGTAAAGGAGAAGAGGTTGGTTTATGCCAATATGTAATAAGCCAATAA 1386 0.4271 MEPICPIGSRCATEISSLLTPPSPLQVQEYYHNLLSARQCSGITVKHDGNFGKGVYATMDFKEGGLVLKDHMLVGAQHSFNKIDCFVCSFCFRFIGSIELQIGRRLYLQELRANEGHGCDVGNFSGSSKGCHEMDSSDEEESTEQCGSGSSKTKVPLPEGVVESLMNGQLILPYSEKFSLPPAVPCPGGCGEAYYCSTSCAEADWESSHSLLCTGEGSDTAPRGALLKFIKHANETNDIFLLAAKAISSTILRYRRIKANCLEEQVKYETSCDPNQCNLSLLLEAWRPISMGHKKRWWDCIALPDDIDSSDEASFRMQIKELAFESLQLLKTAIFDKECEPLFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYIDDMTDPDKEEAEKITQPILDALGEDYSICCQGTAFFPLQSCMNHSCCPNAKAFKRDEDRDGQATIIALRSICKGEEVGLCQYVISQ. 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05434 461 ProSiteProfiles SET domain profile. 41 457 IPR001214 GO:0005515
Seca4g05434 461 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 14 455 IPR044237 GO:0008168
Seca4g05434 461 SUPERFAMILY SET domain 41 452 IPR046341 -
Seca4g05434 461 Pfam SET domain 379 452 IPR001214 GO:0005515
Seca4g05434 461 Gene3D SET domain 364 455 IPR046341 -
Seca4g05434 461 Gene3D - 127 217 - -
Seca4g05434 461 Pfam MYND finger 185 213 IPR002893 -
Seca4g05434 461 SUPERFAMILY HIT/MYND zinc finger-like 188 214 - -
Seca4g05434 461 MobiDBLite consensus disorder prediction 130 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05434 Seca-Chr4 102453982 102459624 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca4g05434 SET 5.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05434 - - gmx:100803651 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05434 4 102453982 102459624 Seca4g05434 4 102453982 102459624 ECH