Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05430 ATGAGAGTTGTTATTGTCACAAGAACAAACCAATTTTTCATTGAAGTAGGTAGCCAAGAAACAGTTGTTGAAATCAAAAGAAAAATAGAACAAATCCAAGGTGTTCCAGTGGCTTCACAAATCCTCACAGTTTCTGGGTGGGAACTAGTGGATGGATTGGACATGGAAGATTATCCAATAGTCACTGAAGGCACAAAAATTGACCTCACCATCAAAACAGTGGAGCCACATCCCAATAATCATCCTAACAAAATGCAAATCATAGTAAAATTTTCAGCTAGACGGATTAACATAGAGGTGGACCGAACAGATACTATTCGCAGCTTGAAGGAAAAAATTCACATAATTGATAGCACACCCATCAAAAGAATGACCCTTTTCTTTTCAGGAATTGAATTGGATGAAGACTTCAGAAACCTGTATGAGTATGGTATTCGTGAATTTTCTGAGATTGTTGTGTTCCTCAAGACCATGAATCGGTCAAGAGATGAACCTCCCACAAGGAAGTTAAGCTTGGTGGTACAAACTTCCTCTAGTTTGCTTAATGCAGCAACCATTCCATTAGAGATGAGAGATGCAAACACTGTTAATGACTTGAAGCACTTGCTGCTAAGCAGAAAAATTCTGCCAGTTGATGACTATTTGTTTATACACAGACAGAGGATCATGCGTGATAGTTGCAGTCTCCGTTGGCATGGAGTTGAAAATGGGGACTGTCTATATGTGTTTAAAGGGACGGTTAGCCGCAATGGGTATGCCTGA 762 0.3963 MRVVIVTRTNQFFIEVGSQETVVEIKRKIEQIQGVPVASQILTVSGWELVDGLDMEDYPIVTEGTKIDLTIKTVEPHPNNHPNKMQIIVKFSARRINIEVDRTDTIRSLKEKIHIIDSTPIKRMTLFFSGIELDEDFRNLYEYGIREFSEIVVFLKTMNRSRDEPPTRKLSLVVQTSSSLLNAATIPLEMRDANTVNDLKHLLLSRKILPVDDYLFIHRQRIMRDSCSLRWHGVENGDCLYVFKGTVSRNGYA. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05430 253 SUPERFAMILY Ubiquitin-like 77 164 IPR029071 -
Seca4g05430 253 CDD Ubl_ubiquitin_like 185 243 - -
Seca4g05430 253 ProSiteProfiles Ubiquitin domain profile. 85 160 IPR000626 GO:0005515
Seca4g05430 253 Gene3D - 84 156 - -
Seca4g05430 253 SMART ubq_7 85 156 IPR000626 GO:0005515
Seca4g05430 253 SMART ubq_7 1 72 IPR000626 GO:0005515
Seca4g05430 253 SMART ubq_7 170 245 IPR000626 GO:0005515
Seca4g05430 253 SUPERFAMILY Ubiquitin-like 1 77 IPR029071 -
Seca4g05430 253 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 74 - -
Seca4g05430 253 ProSiteProfiles Ubiquitin domain profile. 170 242 IPR000626 GO:0005515
Seca4g05430 253 Gene3D - 1 69 - -
Seca4g05430 253 Gene3D - 169 245 - -
Seca4g05430 253 ProSiteProfiles Ubiquitin domain profile. 1 60 IPR000626 GO:0005515
Seca4g05430 253 SUPERFAMILY Ubiquitin-like 181 243 IPR029071 -
Seca4g05430 253 Pfam Ubiquitin family 87 157 IPR000626 GO:0005515
Seca4g05430 253 Pfam Ubiquitin family 7 72 IPR000626 GO:0005515
Seca4g05430 253 CDD Ubl_ubiquitin_like 87 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05430 Seca-Chr4 102424373 102425134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05430 85 156 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.986 2.78e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05430 - - lang:109342690 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05430 4 102424373 102425134 Seca4g05430 4 102424373 102425134 ECH