Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05422 ATGAACGACCTCCTCACTGATTCATTTGTTAGTGAGGCTAATCATGGTCAGCCTTCCAGACAAAGTGATATTGAAATGGGAATGCAGGTTCCAAGAAGCCACTCTGATATGGGAATGGATGCTTTTAATAAGCAGATCCAAGATGCTGATAAACAAATTGATAAGCTGTCTGGGCTACTTCAAAAGCTAAAGGAAGCTAATGAGGAATCAAAAGCTGTTACAAAAGCATCTGCCATGAAAGCTATCAAGAAGAGGATGGAGAAAGATATTGATGAAGTTGGAAAGATTGCACATGGTGTCAAAGCAAAAATAGAAGCTATAAACAGAGATAACCTAAACAATAGACAAAAGCCTGGCTGTGAGAAGGGAACGGGTATTGACAGAGCTAGGATGAATATGACAAATGCCTTGACTAAGAAGTTCAAGGATCTCATGACAGAGTTTCAGACCCTTAGACAAAGAATACAAGATGAATATCGTGAGGTTGTGGAAAGAAGAGTTATTACAGTCACGGGAACTAGACCAGATGATGAGACAATTGATCACCTGATAGAAACTGGAAACAGTGAGCAAATCTTCCAGAAGGCAATTCTTGAAGCAGGCCGAGGACAGGTTGTAAGCACAGTAGAAGAAATTCAGGAGAGACATGATGCTGTAAAAGAAATTGAGAAAAAACTTCTTGATTTACATCAGATATACCTTGACATGGCAGTCTTAGTTGATGCTCAAGGAGAAATTTTAGATAACATTGAAAGTCAGATATTCATTTTCGCTCTTACTCTCCTGTCCGTCACTGTTCCATGA 804 0.393 MNDLLTDSFVSEANHGQPSRQSDIEMGMQVPRSHSDMGMDAFNKQIQDADKQIDKLSGLLQKLKEANEESKAVTKASAMKAIKKRMEKDIDEVGKIAHGVKAKIEAINRDNLNNRQKPGCEKGTGIDRARMNMTNALTKKFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQKAILEAGRGQVVSTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQIFIFALTLLSVTVP. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05422 267 SMART tSNARE_6 204 264 IPR000727 -
Seca4g05422 267 Pfam Syntaxin 42 244 IPR006011 GO:0016020
Seca4g05422 267 MobiDBLite consensus disorder prediction 1 26 - -
Seca4g05422 267 CDD SynN 39 196 IPR006011 GO:0016020
Seca4g05422 267 Gene3D - 35 240 - -
Seca4g05422 267 SUPERFAMILY t-snare proteins 36 255 IPR010989 GO:0016020|GO:0016192
Seca4g05422 267 SMART SynN_4 34 160 IPR006011 GO:0016020
Seca4g05422 267 Coils Coil 39 76 - -
Seca4g05422 267 FunFam Syntaxin 132 34 163 - -
Seca4g05422 267 CDD SNARE_syntaxin1-like 208 254 - -
Seca4g05422 267 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 254 IPR000727 -
Seca4g05422 267 PANTHER SYNTAXIN 39 254 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05422 Seca-Chr4 102338089 102345949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05422 1 254 SNARE and Associated Proteins AT3G03800 61.811 1.28e-106 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05422 K08486 - gmx:100800991 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05422 4 102338089 102345949 Seca4g05422 4 102338089 102345949 ECH