Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05409 ATGCCAGCTGGTATTATGATTCCGGCGAGAAACATGCCCTCCATGATTGGAAGAAACGGCGCCGTTGGTGGATTTGGATTATCTTCAGGACTCTCTCTTGGTCAGCAGCCAAACCTAATGGAAGGTGGTCATCTTCTCCCACTGGATCACATGGCTCAGAACACTACCTCAGAGAGTGATATCCCCAGAATCCGTGAAGATGAGTTCGTCGACAGTGCCACCAAGTCAGGTAGTGAAAACCAGGAAGGTGCTTCAGGTGAAGACCAAGACCCTCGTCCCAATAAGAAGAAGCGTTACCACCGCCACACACAGCATCAGATCCAGGAAATGGAAGCTTTCTTTAAGGAGTGTCCGCACCCTGATGACAAGCAAAGGAAGGAACTCAGCCGAGAGTTAGGGTTAGAGCCATTACAGGTCAAGTTTTGGTTCCAAAACAAGCGCACTCAGATGAAGACCCAACATGAGAGGCATGAGAACACACAGCTTAGAACTGAGAATGAGAAGCTTCGTGCGGATAACATGAGGTTCAGGGAAGCTCTTAGCAATGCCTCTTGTCCTAATTGTGGTGGACCAACAGCTATAGGAGAAATGTCATTTGATGAACATCACTTGAGGCTCGAAAATGCTCGCCTAAGAGAAGAGATTGATAGGATTTCTGCCATTGCTGCCAAGTATGTAGGCAAGCCTGTGGGGAGCTATCCACTTCTTTCATCACCTTCATCTGTTCCTCCTCGCCCTCTTGAGCTTGGGATAGGTGGTGGTTTTGGTGGCCAACCTGGAGGAGGCATTGGTGGTGGAGATATGTATGGAGCTGGAGATCTTCTTAGGTCAATAAGTGGACCCACTGAAGCTGATAAACCAATAATAATAGAGCTAGCTGTTGCAGCTATGGAGGAGCTAATTGGAATGGCACAAATGGGTGAGCCACTTTGGTTAACCACCCTGGATGGCTCCACCACTGTGCTCAATGAGGATGAATACATCAGATCCTTTCCAAGAGGAATTGGACCAAAGCCTGCTGGATTCAAGTGTGAAGCTTCAAGAGAAACCGCTGTTGTCATCATGAATCATGTTAACCTTGTTGAGATTCTCATGGACACGATATTCTCTTGTGTTTTTAAGAACCAATGGTCCACAGTGTTCTCTGGAATAGTCTCAAGAGCAATGACTCTAGAAGTGCTATCAACTGGGGTAGCGGGGAACTATAATGGCGCATTGCAAGTGATGACAGCAGAACTACAAGTACCTTCACCTCTTGTGCCAACTCGAGAGAGCTATTTTGTAAGGTATTGTAAGCAACATGCTGATGGGACTTGGGCAGTGGTTGATGTGTCTTTGGATAATTTGCGCCCTAGTCCTTCTGCCAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCCAATGGCTACTCTAAGGTGATATGGGTTGAGCATGTAGAAGTGGATGATAGAGGTGTTCATAGTCTATACAAGCAGCTTGTTAGCTCTGGACATGCATTTGGTGCAAAACGTTGGATTGCAACCTTAGATCGACAATGTGAAAGGCTTGCTAGTGCCATGGCTACAAATATTCCCACCGTAGATGTTGGCGTGATAACAAACCAAGATGGGAGGAAGAGTATGTTGAAACTGGCTGAGAGAATGGTTATAAGCTTTTGTGCTGGAGTGAGTGCTTCTACTGCTCATACATGGACAACACTTTCTGGGACTGGTGCTGATGATGTAAGAGTCATGACCCGTAAGAGTGTAGATGACCCTGGAAGGCCTCCTGGTATTGTTCTCAGTGCTGCAACTTCTTTTTGGCTTCCAGTTCCACCAAAAAGAGTTTTTGAATTCCTCCGAGATGAGAACTCTAGAAGTGAGTGGGATATCCTTTCCAATGGAGGAGTTGTCCAAGAAATGGCACATATTGCTAACGGCCGAGATACCGGGAATTGTGTCTCTCTTCTTCGAGTTAATAGTGCCAATTCAAGTCAAAGCAACATGTTGATATTACAAGAGAGTTGCACCGACTCAACAGGCTCTTTTGTTATATATGCTCCTGTAGACATTGTAGCAATGAATGTGGTTCTAAATGGAGGGGACCCAGATTATGTAGCCCTTCTCCCTTCAGGGTTTGCTATACTCCCAGATGGGACCACATCACATGGTGCTGGCATTGGTGAAACTGGACCTGGTGGATCTCTCTTGACTGTTGCATTTCAAATATTAGTTGATTCAGTTCCAACCGCAAAGCTTTCTCTTGGATCTGTTGCAACAGTTAACAATCTTATTGCATGCACTGTTGAGAGAATCAAGGCTTCACTATCTGGTGAAGTTGCTTGA 2334 0.4576 MPAGIMIPARNMPSMIGRNGAVGGFGLSSGLSLGQQPNLMEGGHLLPLDHMAQNTTSESDIPRIREDEFVDSATKSGSENQEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVGSYPLLSSPSSVPPRPLELGIGGGFGGQPGGGIGGGDMYGAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGSTTVLNEDEYIRSFPRGIGPKPAGFKCEASRETAVVIMNHVNLVEILMDTIFSCVFKNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHSLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTSHGAGIGETGPGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEVA. 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05409 777 ProSiteProfiles START domain profile. 282 521 IPR002913 GO:0008289
Seca4g05409 777 ProSiteProfiles 'Homeobox' domain profile. 93 153 IPR001356 GO:0003677
Seca4g05409 777 SUPERFAMILY Bet v1-like 538 769 - -
Seca4g05409 777 CDD homeodomain 96 154 IPR001356 GO:0003677
Seca4g05409 777 SMART START_1 291 518 IPR002913 GO:0008289
Seca4g05409 777 MobiDBLite consensus disorder prediction 72 104 - -
Seca4g05409 777 SUPERFAMILY Homeodomain-like 85 153 IPR009057 -
Seca4g05409 777 CDD START_ArGLABRA2_like 286 517 - -
Seca4g05409 777 Pfam Homeodomain 96 151 IPR001356 GO:0003677
Seca4g05409 777 Coils Coil 159 179 - -
Seca4g05409 777 SMART HOX_1 94 157 IPR001356 GO:0003677
Seca4g05409 777 Gene3D - 81 170 - -
Seca4g05409 777 ProSitePatterns 'Homeobox' domain signature. 128 151 IPR017970 GO:0000981|GO:0006355
Seca4g05409 777 SUPERFAMILY Bet v1-like 282 520 - -
Seca4g05409 777 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 94 772 IPR042160 -
Seca4g05409 777 FunFam Homeobox-leucine zipper protein HDG1 82 169 - -
Seca4g05409 777 Pfam START domain 292 518 IPR002913 GO:0008289
Seca4g05409 777 Gene3D - 349 515 IPR023393 -
Seca4g05409 777 FunFam Homeobox-leucine zipper protein GLABRA 2 291 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05409 Seca-Chr4 102052837 102059418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05409 64 777 Homeobox Transcription Factor Family AT1G05230 79.358 0.0 1157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca4g05409 START 1.4e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05409 K09338 - gmx:100809556 1372.84