Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05404 ATGGAGGTTCTCTGGGTGAGGGCGTTGTTTCTCTTGGTTTTCTGCTTGTGGAATCCCATGGAAGTGGTGGGAAGGACAGGGATTACCATGGTGAACTCTACTGTTCCTTCAAGAGCCAATGTTTTGAGAATTGGAGCACTGTTTACTTTTGATTCTGTAATTGGAAGATCAGCTAAACCTGGAATCTTGGCTGCAATTGAAGATGTTAATGCTAATAAGAGCATTCTCCCTGGCGTTAAGCTGGAATTGATTTTACACAATACTAACTGCAGTCCGTTTCTTGGAACAGTTGAAGCTTTGCAGTTGATGGAGAATGAAATTGTTGCTGCTATTGGTCCACTATCCTCTGGAATAGCTCATGTCATCTCTCATGTTGTTAATGAACTCCATGTACCTCTTCTTTCATTTGGTGCAACAGACCCTTCTCTATCTTCTCTGCAGTACCCATATTTTGTCCGCACCACCCACAGTGACTATTTTCAGATGTATGCAATTGCTGACTTGGTTGATTATTATAGATGGAGGGAAGTAATTGCCATTTTTGTAGATGATGATAATGGAAGGAATGGGATTGCAGCACTAGGAGATGCTCTTGCAAAGAAACGTGCCAAGATCTCTTACAAGGCTGCTTTCCCTCCTGGAGCCTCAAAGAATGATATCAGTGACTTGTTAAATGGAGTAAACTTGATGGAATCACGGGTCTATGTTCTTCATGTTAATCCTGATTCTGGTATGACAGTTTTTTCTATTGCCAAGAAGCTTGGAATGATGACCAGCGGCTATGTATGGATTGCAACAGATTGGCTTCCTTCAGTGTTGGATTCAATGGAGTCAGTGGACACTAACACAGTAAATATGCTACAAGGGGTTGTGGCTTTGCGTCATCACACTCCTGATACTAATCTCAAGAAGCGTTTTCTCTCTAGGTTGAAGAAACTACAAGGCATGGAGAATGCAAGCTTCAACTCTTATGCATTATATGCATATGATTCTGTTTGGTTAGCAGCACATGCTCTTGATACTTTTCTTAAAGAAGGTGGAAACATTTCTTTCTCCTCTGATCCTAAGTTGCTTGACACAAATGGAAGCATGTTGCATTTATCATCACTTCGTGTATTTGATGGTGGTCCATTGTTTCTCCCAACAGTTATGAGAATGAACTTCACTGGTATGAGTGGTCAAATTCAGTATGATGTGGAAAAGAATCTAATTCATCCTGCTTATGATATCTTGAACATTGGTGAATCTGGATCCAGGAGAATTGGTTATTGGTCTAATTACTCTGGTCTATCAGTTTTACCTCCTGAAATTTTGTATAAGAAACCACCTAACACTTCAACAATCAATCAAAAACTTTACAGTGTTTTATGGCCTGGAGAAACTGTAGCTACACCAAGAGGGTGGGTGTTCCCCAACAATGGAAAGCCACTGCGAATAGCAGTGCCTCACCGAATAAGCTACTTGGAGTTTGTTGCTAAAGACAAGAACCCTCCTGGAGTAAGAGGCTTTTGTATTGATGTCTTTGAAGCAGCCATAAACTTGTTGCCTTATCCTGTCCCACGACAATATATATTATATGGAAATGGTGAAAGAAATCCCAACTACAATGAACTTGTCAATCAGGTTGCACTAAATAACTATGATGCAGCTGTTGGAGATGTCACAATTGTTCCAAACAGGACAAGAGTTTTGGATTTCACTCAACCTTTCATGGAATCAGGGCTGGTAGTTGTTGTTCCTGTCAAGGAGATCAAATCAAGCCCATGGGCTTTCCTCAAGCCATTCACTGCTCAAATGTGGTGTGTTACTGGTGCCTTCTTTCTTTTTGTGGGAGCTGTTGTATGGATTCTTGAGCACCGGCACAATCCAGAGTTTCGTGGTAAACCGAGGAAACAACTTATGACAGTCTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGTATGTGCCCCACACATTCTTAA 1968 0.4096 MEVLWVRALFLLVFCLWNPMEVVGRTGITMVNSTVPSRANVLRIGALFTFDSVIGRSAKPGILAAIEDVNANKSILPGVKLELILHNTNCSPFLGTVEALQLMENEIVAAIGPLSSGIAHVISHVVNELHVPLLSFGATDPSLSSLQYPYFVRTTHSDYFQMYAIADLVDYYRWREVIAIFVDDDNGRNGIAALGDALAKKRAKISYKAAFPPGASKNDISDLLNGVNLMESRVYVLHVNPDSGMTVFSIAKKLGMMTSGYVWIATDWLPSVLDSMESVDTNTVNMLQGVVALRHHTPDTNLKKRFLSRLKKLQGMENASFNSYALYAYDSVWLAAHALDTFLKEGGNISFSSDPKLLDTNGSMLHLSSLRVFDGGPLFLPTVMRMNFTGMSGQIQYDVEKNLIHPAYDILNIGESGSRRIGYWSNYSGLSVLPPEILYKKPPNTSTINQKLYSVLWPGETVATPRGWVFPNNGKPLRIAVPHRISYLEFVAKDKNPPGVRGFCIDVFEAAINLLPYPVPRQYILYGNGERNPNYNELVNQVALNNYDAAVGDVTIVPNRTRVLDFTQPFMESGLVVVVPVKEIKSSPWAFLKPFTAQMWCVTGAFFLFVGAVVWILEHRHNPEFRGKPRKQLMTVFWFSFSTMFFSHSMCPTHS. 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05404 655 Pfam Ligated ion channel L-glutamate- and glycine-binding site 495 580 IPR019594 GO:0004970|GO:0016020
Seca4g05404 655 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 55 71 - -
Seca4g05404 655 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 328 340 - -
Seca4g05404 655 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 115 143 - -
Seca4g05404 655 CDD PBP1_GABAb_receptor_plant 43 432 IPR044440 -
Seca4g05404 655 FunFam Glutamate receptor 472 588 - -
Seca4g05404 655 Pfam Receptor family ligand binding region 60 413 IPR001828 -
Seca4g05404 655 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 643 IPR015683 -
Seca4g05404 655 SUPERFAMILY Periplasmic binding protein-like II 452 605 - -
Seca4g05404 655 SUPERFAMILY Periplasmic binding protein-like I 37 468 IPR028082 -
Seca4g05404 655 SMART GluR_14 478 641 IPR001320 GO:0015276|GO:0016020
Seca4g05404 655 FunFam Glutamate receptor 157 317 - -
Seca4g05404 655 Gene3D - 157 430 - -
Seca4g05404 655 Gene3D - 589 655 - -
Seca4g05404 655 Gene3D - 472 588 - -
Seca4g05404 655 Pfam Ligand-gated ion channel 597 648 IPR001320 GO:0015276|GO:0016020
Seca4g05404 655 Gene3D - 64 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05404 Seca-Chr4 101940893 101945744 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05404 37 648 Ion Channels AT1G05200 66.503 0.0 888
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05404 K05387 - gmx:100799912 1047.73