Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05402 ATGGTGGGTGACTTCAAATCCGGGTCAAGTATGAAGCTGTTTATGGTTCTGTACCTTGTGATTTTGATTTGGGCAATCCTCCTTTGTGGTATTGCTCATAGCGGAAGGCCTGCCAGTGTGAACATTGGTGCAGTTTTCACCTTCGATTCGGTCATAGGTAAAGCTGCGAAGGCAGCTATGGAAATGGCTGTTTCTGATGTCAATTTGGACCCAAAAGTTCTCAACGGGACCAAGCTCAAGTTGATAATGAGTGATGGCATGTGCAATGCCTTTCTGGGATCAACAGGAGCTTTTCAGATACTTGAGCAAGGGGTTGCAGCCATAATTGGCCCACAGTCATCTGCCATGGCTCATACAATTTCCCAAATTGCTGATGCTGTCCAGGTTCCTCTTATTTCATATGCTGCCACTGATCCAACACTATCCTCCCTTCAGTTTCCTTTATTTTTTCGTACTATACAAAGTGACTTGGAGCAAATGACCGCAATGGCCAACCTAATTGATTTTTATGGATGGAAAGAGGTCATTGCTGTATACTTGGATGATGATTATGGAAGAAATGGAATATCTGCTTTGGGTGATGAACTTGAAAAAAGGAGATTGAAAATTGCTCATAAACTACCTTTGAGTATTCAGTTTGATCTGGATGAAATCACTGACTTGCTCAATCAATCCAAATTGTTCGGCCCTCGAGTGTATGTTGTTCATGTCAACCCAGATCCGAGATTGAGAATTTTTTCAGCTGCGCACAAACTTCAAATGATGGCCAATAACTTTGTCTGGCTTGCCACAGATTGGCTCTCTGCTACCCTAGATTCATTATCCCCAGTGAATCAGACCTCTCTCAGTGTTCTACAAGGGGTTGTTGGTCTTCGTCAACACATTCCAGATTCTAGGAAAAAAAGAGCTTTTGTTTCTCGATGGACAAAAATGCAAAAAGAAGGTGTAGCAAATACTAGTTTGAACTCCTATGGATTTTATGCTTATGATACTGTTTGGGCAGTTGCACTTTCAATTGACAAATTTATAGAACTACATAATAATATTACCTTCTTGCTTCATGATAATAATAAGCTGCCTCAAACAGAAGGAATTGGTATTCAGCTTGAGAAGCTCAAAGTCTTTGCTGGTGGATCTGATCTGGTAAACATATTATCAAAATCAAATTTTACTGGTGTGAGTGGTCAACTTCGGTTTAATACAGACAGAAATATCATAAGTGGTGGTTATGATGTTATCAATATCAATCAGATGGAAATTACTACGGTTGGTTATTGGTCTAGTTATTCAGGATTCTCAGTTGTGCCCCATGAAGTTCTTAAAAGAAAAGGACATAGCAGGATTTCCCAAGATCAGAAGCTTGATAATATTACTTGGCCAGGTGGGAAGACTGAAAGACCACGTGGCTGGGTGATTGCTGATAATGCAAAGCCACTGAGAATTGGAGTCCCAAAGAGAGCAAGTTTTGTTGAATTTGTAACGGAACTGCAAGATAGTCATCAAATGCAGGGGTACTGCATTGATATCTTCACGAAAGCCCTCGAATTTATTCCATATGATGTTCCTTATGCATTCAAGCCTGTTGGGAATGGTAAAGCAAATCCCAATTATGATGCACTTGTGAAAATGATTGATGACAATATATATGATGCAGTTGTTGGAGACATTGCAATTGTAACAAACCGTACAAAAATTGTGGATTTTTCTCAGCCTTTTGCATCATCCAGCCTTGTTATAGTGGCTCCTATCAACAGTGTAAGATCAAATTCTTGGGTGTTCCTCAAACCATTCACAGCAGATATGTGGTGTGTCATTGCTGCATCATTTATGATGATTGGAGTGGTTATATGGATTCTTGAGCACCGAGTCAATGATGACTTCCGTGGTCCTCCTAAGAGGCAACTTGTGACAATGTTTATGTTCAGCCTCTCAACACTGTTTAAGACAAATCAGGAGAAGACAGTAAGCTCACTGTCTAAAATGGTGATGATCGTCTGGCTTTTTCTACTGATGGTGATCACAGCTAGCTATACAGCAAGCTTGACTTCAATTCTTACAGTGGAGCAGCTTTCATCACCCATCACAGGAATTGATAGCTTGATTGCAAGTAACTGGCCTATTGGATACCAAGTAGGGTCATTTGCATACAGCTATCTGACAGATAATCTCTATGTACCAAGTTCAAGACTTGTTTCCTTAGGCTCCCCTGAGGAGTATGCTGTAGCGCTGCGGAATGGACCATCTGGTGGAGGGGTGGCAGCCATCATTGATGAGCTTCCTTATGTGGAGTTATTTCTGTCAAAAGAAACTGATTTTGGTATTATTGGACAGCCATTTACCAGAAGCAGTTGGGGATTTGCTTTTCAAAGAGACTCTCCTCTTGCCCTTGACATGTCCACAGCAATTTTGAAACTCTCTGAGAGTGGAGAGCTTCAAAAGATACATGAGAAGTGGTTCTGTAAGATGGGCTGTCCTGGAGAAAGGAAAACCAATCCTAAGCCTGATCAACTTCACTTGGTTAGCTTTTGGGGTCTATATCTCTCATGTGGTGTTGTCTCTCTTGCTGCACTTGTGCTGTTTCTGCTACGAATGATTTGCCAATATGCCCGCTTCAAACAAAGACAAAAGGACGTTGCTTCTTCATCCTCAGAATCATCAAGTAGTCATTGTTCCCAGGTGGTTGTAAACTTCTTTAACTTCATTGATGAGAAGGAAGAGGCCATCAAGAAAATGTTCACTCAATGTGACAATCGTCACAACCCCAACTGA 2769 0.411 MVGDFKSGSSMKLFMVLYLVILIWAILLCGIAHSGRPASVNIGAVFTFDSVIGKAAKAAMEMAVSDVNLDPKVLNGTKLKLIMSDGMCNAFLGSTGAFQILEQGVAAIIGPQSSAMAHTISQIADAVQVPLISYAATDPTLSSLQFPLFFRTIQSDLEQMTAMANLIDFYGWKEVIAVYLDDDYGRNGISALGDELEKRRLKIAHKLPLSIQFDLDEITDLLNQSKLFGPRVYVVHVNPDPRLRIFSAAHKLQMMANNFVWLATDWLSATLDSLSPVNQTSLSVLQGVVGLRQHIPDSRKKRAFVSRWTKMQKEGVANTSLNSYGFYAYDTVWAVALSIDKFIELHNNITFLLHDNNKLPQTEGIGIQLEKLKVFAGGSDLVNILSKSNFTGVSGQLRFNTDRNIISGGYDVININQMEITTVGYWSSYSGFSVVPHEVLKRKGHSRISQDQKLDNITWPGGKTERPRGWVIADNAKPLRIGVPKRASFVEFVTELQDSHQMQGYCIDIFTKALEFIPYDVPYAFKPVGNGKANPNYDALVKMIDDNIYDAVVGDIAIVTNRTKIVDFSQPFASSSLVIVAPINSVRSNSWVFLKPFTADMWCVIAASFMMIGVVIWILEHRVNDDFRGPPKRQLVTMFMFSLSTLFKTNQEKTVSSLSKMVMIVWLFLLMVITASYTASLTSILTVEQLSSPITGIDSLIASNWPIGYQVGSFAYSYLTDNLYVPSSRLVSLGSPEEYAVALRNGPSGGGVAAIIDELPYVELFLSKETDFGIIGQPFTRSSWGFAFQRDSPLALDMSTAILKLSESGELQKIHEKWFCKMGCPGERKTNPKPDQLHLVSFWGLYLSCGVVSLAALVLFLLRMICQYARFKQRQKDVASSSSESSSSHCSQVVVNFFNFIDEKEEAIKKMFTQCDNRHNPN. 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05402 922 FunFam Glutamate receptor 155 316 - -
Seca4g05402 922 SMART GluR_14 478 821 IPR001320 GO:0015276|GO:0016020
Seca4g05402 922 Pfam Ligand-gated ion channel 820 851 IPR001320 GO:0015276|GO:0016020
Seca4g05402 922 Gene3D - 58 408 - -
Seca4g05402 922 FunFam Glutamate receptor 716 823 - -
Seca4g05402 922 Gene3D - 767 826 - -
Seca4g05402 922 Pfam Receptor family ligand binding region 57 416 IPR001828 -
Seca4g05402 922 PIRSF IGluLR_plant 9 922 IPR017103 -
Seca4g05402 922 Gene3D - 474 591 - -
Seca4g05402 922 SUPERFAMILY Periplasmic binding protein-like II 458 819 - -
Seca4g05402 922 SUPERFAMILY Periplasmic binding protein-like I 35 461 IPR028082 -
Seca4g05402 922 Pfam Bacterial extracellular solute-binding proteins, family 3 491 819 IPR001638 -
Seca4g05402 922 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 53 69 - -
Seca4g05402 922 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 113 141 - -
Seca4g05402 922 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 328 340 - -
Seca4g05402 922 Gene3D - 592 717 - -
Seca4g05402 922 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 880 IPR015683 -
Seca4g05402 922 CDD GluR_Plant 477 819 - -
Seca4g05402 922 FunFam Glutamate receptor 590 727 - -
Seca4g05402 922 Gene3D - 155 432 - -
Seca4g05402 922 FunFam Glutamate receptor 474 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05402 Seca-Chr4 101910864 101917156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05402 36 920 Ion Channels AT2G32400 56.404 0.0 1034
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05402 K05387 - gmx:100796389 1507.66