Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05389 ATGGCGAGAATGATCTCCAACAACAACAATGAGGCTGATAGTAATGCATCAACTGATGAGGGTGAGTCAAGAGGTCGTATGAAAAAGGGGCCTTGGACCCCAAAAGAAGATAAGATTTTGATAGAGTACGTGAAAAAATATGGTGAAGGGAATTGGAACTCTGTTCAGAAGAATTCCGGGTTGTTAAGGTGTGGTAAAAGTTGCAGACTTAGATGGGCCAATCATCTAAGGCCTAATCTGAAGAAAGGCGCATTTTCTCAAGAAGAAGAAAAAATTATCATTGACCTTCATGCTAAGCTTGGAAACAAATGGGCTCGAATGGCCTCACAGTTACCTGGGAGGACCGACAATGAAATAAAGAACTTTTGGAATACTCGAATGAAAAGGCTCCAAAGAGCAGGGTTACCCCTTTATCCCCCAAAAGTCCATATTGAAGCCAATGCATACCATCAACATCTACAACAACAACACCACTTGGAGAATCCTTACCCTTCTTCATCTTTATCGTCATTTTCTTTACTCTTATCTTCTTGTTATCCCAAGAAGCTCAATGATTCAAGCCAGTATTCTACTACAAACCCTCTAAAAACTCATCCTAATACTACTAATTATTACACCGATCCATCCCAGCAGTTCAAGCTTTCCAATGAAAATAGAGGGAATAGGAATCTTGCTTTGCCATTGTCCACTGTCTCTCCATATGGATCTTCATCCTCGACTCTTTTCAACCAGAATTTTGCCGCTCATGATTCAGCTCCAACTGATCATGATTCACATGATTACCAATGTTCTGGAAGCTATAATCTTGGATTCATTTCCAGATCTCCATATGAACCCCTTCCTAATTTGGTGCTAGGCTCCAGTAATGAAATCTCTTCTAGTCAAATTACAACACTTGGCCCAACAACTCCTGCTTCATCCAATGCTAGTGGTGTTGATGGCTTCACTGGAGCTTTAAGCATGGTTAATGACTATAATGAAGTTGCGTCGTTATCTCCTCAAAGAAATAGCGGCCTATTGGATGCTTTAGTAGAGGAGGCTAAAATTCTTTCTCGCAGAGACAAATCTAAGAGTGAGGATTTGATTGTAGCAGGGAATTTATCTTATAAAAGGAAAAACATGATGAGTGAGGAATATGCAAAGGATGAAGACACTATGCTTGTTGCGTCAGTTATTAAGAACAATGGGGACATTGCTAATGAAAACCAAAGGGATGAATTTAACTCTTCTCAATTGTCAACAGGGAAGAAACCAATTGGCGAGGATCCGTTGGAGGAGATGAATTCCATGGATGATGATGACTTGTTTAGCTTGCTCAACAATTTTCCCTCTGAAATGCCAATGCCAGGGTGGTATCGTAGAGGAGGAAGTCAGTCATTGGGACCTGAAACTCAACCCGATGCTTCTTCACCTGGACCTACTCATCAAGATTTTGCTTGGACTCTCGGGACTTGCTGGAACAATATGCCTGACATATGCTAA 1482 0.4096 MARMISNNNNEADSNASTDEGESRGRMKKGPWTPKEDKILIEYVKKYGEGNWNSVQKNSGLLRCGKSCRLRWANHLRPNLKKGAFSQEEEKIIIDLHAKLGNKWARMASQLPGRTDNEIKNFWNTRMKRLQRAGLPLYPPKVHIEANAYHQHLQQQHHLENPYPSSSLSSFSLLLSSCYPKKLNDSSQYSTTNPLKTHPNTTNYYTDPSQQFKLSNENRGNRNLALPLSTVSPYGSSSSTLFNQNFAAHDSAPTDHDSHDYQCSGSYNLGFISRSPYEPLPNLVLGSSNEISSSQITTLGPTTPASSNASGVDGFTGALSMVNDYNEVASLSPQRNSGLLDALVEEAKILSRRDKSKSEDLIVAGNLSYKRKNMMSEEYAKDEDTMLVASVIKNNGDIANENQRDEFNSSQLSTGKKPIGEDPLEEMNSMDDDDLFSLLNNFPSEMPMPGWYRRGGSQSLGPETQPDASSPGPTHQDFAWTLGTCWNNMPDIC. 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05389 493 SUPERFAMILY Homeodomain-like 26 123 IPR009057 -
Seca4g05389 493 SMART sant 81 129 IPR001005 -
Seca4g05389 493 SMART sant 28 78 IPR001005 -
Seca4g05389 493 FunFam MYB-related transcription factor 28 81 - -
Seca4g05389 493 Pfam Myb-like DNA-binding domain 29 76 IPR001005 -
Seca4g05389 493 Pfam Myb-like DNA-binding domain 82 125 IPR001005 -
Seca4g05389 493 MobiDBLite consensus disorder prediction 1 32 - -
Seca4g05389 493 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 76 IPR017930 -
Seca4g05389 493 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 8 460 - -
Seca4g05389 493 MobiDBLite consensus disorder prediction 447 475 - -
Seca4g05389 493 CDD SANT 31 76 IPR001005 -
Seca4g05389 493 CDD SANT 84 125 IPR001005 -
Seca4g05389 493 FunFam Transcription factor MYB97 84 161 - -
Seca4g05389 493 Gene3D - 84 160 - -
Seca4g05389 493 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Seca4g05389 493 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Seca4g05389 493 MobiDBLite consensus disorder prediction 458 475 - -
Seca4g05389 493 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 131 IPR017930 -
Seca4g05389 493 MobiDBLite consensus disorder prediction 17 32 - -
Seca4g05389 493 MobiDBLite consensus disorder prediction 1 16 - -
Seca4g05389 493 Gene3D - 28 81 - -
Seca4g05389 493 MobiDBLite consensus disorder prediction 399 426 - -
Seca4g05389 493 MobiDBLite consensus disorder prediction 399 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05389 Seca-Chr4 101584131 101587618 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05389 25 143 MYB Transcription Factor Family AT2G32460 84.167 6.11e-68 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g05389 Myb_DNA-binding 3.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05389 K09422 - gmx:100784779 543.117