Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05388 ATGAACTCCAACAACAACAGCAACAATGAGGCCATAGAGGCTGACAGTAACACATTAGCAGATGATGGTGATTCTAGAGGTCACATGAAGAAGGGGCCTTGGACCCCACAAGAAGATAAGATTTTGATCGAGTACGTGAATAAGCATGGTGAAAGGAATTGGAACGCTGTGCAGAAAAATTTCGGGTTATTAAGGTGTGGAAAAAGTTGCAGACTTAGGTGGGCTAATCATCTAAGGCCCAATCTAAAGAAAGGATCTTTTTCTCAAGAAGAAGAAAAAATCATCGTCGATCTTCATGCCAAAATTGGAAACAAATGGGCTCGAATGGCCTCGCAGGTATTACCTGGAAGGACCGACAATGAAATAAAGAACTTTTGGAATACAAGAATGAAAAGGAGGCAAAGAGAAGGGTTACCCCTTTATCCCCCTGAAGTCTATGCAGAAGCAAATGCATACCATCAACTTCTTCGCCAACAGCAACACCAGTCGGGAAAACCATACCCTTCTTCATCTTTATCATCATTTTCTTTACTCTTATCTTCTTGCTACCCAAAGAAGCTCGATGAGCCTAGTCATTATTCAACTATGAAAAGCCACCTTGATTTTTCTAATTATTACACCAATCCATCCCAACAGTTCAAGCATTCCAATGAAAAAAAAGATTATGAAAATCTCACTTTCCCATTCTCCCCTCTCTCTCCATATGGATCTTCATCGTCAACTCTTTACAACCAAAGTTTTGCTGCTCATAATGCAACCCCAACTCATGATTCATATGATTGTCAATATTCTAGAAGCTATGATCATGGCTTCAATACAGGATCTCCATATGAAACCCTTCCTAATTTGGTGCCAGGTTCCACCACTGAGATCTCTTTGAGCCAAATAGCTCCCAACTTAGCAACTCCTGCTTCATCCAATGTTAGTGGTGTTGATGGAATCATAGGAGCTTCAAGCATCACTAATGACTATAATGAAGTTATGTCATTATCTCCTCAAGGAAACAGTGGTTTGTTGGATGCTTTAGTGGAGGAAGCAAAATATATTTCTCGTAAAGACAAGTCCAAGAGTGAGGATTCAATTGTACCAAGGAAGTTATGTTATAAGAGGAAAAGCATGGTAAGTGAGGAAAATACAAAGGAAGAAGACTCTGTGCTAGTTGCGTCAATCGTGAAAAACAATGGGGACATTAAGGAAAACCAGAAGGATGAATTTATCCCTTCTCAATTATCAACAGGAAAGAAACCAATTGGTGAGGATCCGTTGGAAGAGATAAAATCCATGGATGATGATGACGACTTGTTTAGCTTGCTCAATAATTTTCCCTCAGAAATGCCTGTGCCAGAGTGGTACCGTAAAGGAGAAAGTCAGTCACTGGGACTTGAAACTCAACTTGATGCTTCTTCACCTAGCCCTACTCATCAAGAGTTTGCCTGGACTCTCGGAACTTCCTGGAACAATGCGCCTGGCATATGCTAA 1479 0.4064 MNSNNNSNNEAIEADSNTLADDGDSRGHMKKGPWTPQEDKILIEYVNKHGERNWNAVQKNFGLLRCGKSCRLRWANHLRPNLKKGSFSQEEEKIIVDLHAKIGNKWARMASQVLPGRTDNEIKNFWNTRMKRRQREGLPLYPPEVYAEANAYHQLLRQQQHQSGKPYPSSSLSSFSLLLSSCYPKKLDEPSHYSTMKSHLDFSNYYTNPSQQFKHSNEKKDYENLTFPFSPLSPYGSSSSTLYNQSFAAHNATPTHDSYDCQYSRSYDHGFNTGSPYETLPNLVPGSTTEISLSQIAPNLATPASSNVSGVDGIIGASSITNDYNEVMSLSPQGNSGLLDALVEEAKYISRKDKSKSEDSIVPRKLCYKRKSMVSEENTKEEDSVLVASIVKNNGDIKENQKDEFIPSQLSTGKKPIGEDPLEEIKSMDDDDDLFSLLNNFPSEMPVPEWYRKGESQSLGLETQLDASSPSPTHQEFAWTLGTSWNNAPGIC. 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05388 492 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 134 IPR017930 -
Seca4g05388 492 MobiDBLite consensus disorder prediction 1 15 - -
Seca4g05388 492 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 82 IPR017930 -
Seca4g05388 492 ProSiteProfiles Myb-like domain profile. 26 78 IPR001005 -
Seca4g05388 492 ProSiteProfiles Myb-like domain profile. 79 130 IPR001005 -
Seca4g05388 492 SMART sant 30 80 IPR001005 -
Seca4g05388 492 SMART sant 83 132 IPR001005 -
Seca4g05388 492 SUPERFAMILY Homeodomain-like 29 126 IPR009057 -
Seca4g05388 492 Gene3D - 30 83 - -
Seca4g05388 492 MobiDBLite consensus disorder prediction 19 34 - -
Seca4g05388 492 MobiDBLite consensus disorder prediction 1 34 - -
Seca4g05388 492 FunFam MYB-related transcription factor 30 83 - -
Seca4g05388 492 CDD SANT 86 128 IPR001005 -
Seca4g05388 492 Pfam Myb-like DNA-binding domain 31 78 IPR001005 -
Seca4g05388 492 Pfam Myb-like DNA-binding domain 84 128 IPR001005 -
Seca4g05388 492 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 7 459 - -
Seca4g05388 492 Gene3D - 86 133 - -
Seca4g05388 492 CDD SANT 33 78 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05388 Seca-Chr4 101529147 101532428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05388 3 154 MYB Transcription Factor Family AT5G06100 69.032 3.61e-67 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g05388 Myb_DNA-binding 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05388 K09422 - gmx:100798860 498.049