Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05381 ATGGAGTGGATTAGAGGCACCACCATAGGACATGGCTCTTCAGCCACCGTCTACCTCGCCACCTCTCGTCGCTCCACCACCGAACTCTCCGCCGTGAAATCAGCAGAGCTATCTCTATCACAGTCACAACAGCTGCAGAGAGAACAGAGGATTCTGTCTTCTCTGTCTTCTCCTCACATAGTTAGCTACAAAGGATGTGACATTACCAAAGAAAGCAACAAGCTTTGGTTCAACCTCTTCATGGAGTACATGCCCTTTGGAACTCTCTCTCAGGAAACTCGCCGGCACGGTGGCCGGCTCGATGAGCCGGCGATCGCACAGTACACGTGGCAAGTGTTGCAGGGGTTAGAGTATTTGCATTCAAACGGTGTCGTACATTGTGATATAAAGGGTAGTAACATATTGATTGGTGAAGATGGAGCTAAAATTGGAGACTTTGGATGTGCCAAGCTTGTTACTGACCCGGTGGCGCCGATCGCCGGAACGCCGATGTTCATGGCGCCGGAGGTGGCGCGTGGGGAAGAACAGGGGTGTCCTTGTGATGTTTGGGCACTTGGGTGTACTGTGGTTGAAATGGCCACTGGGTTTGCGCCATGGCCTAATGTGGAAGACCCTGTTATGGTTCTGTATCGTGTTGCATATTCTGGTGAGGTTCCTGAGATTCCTTGTTTTCTTTCTGAGGAAGCAAAGGATTTCTTGGGGAAGTGTTTTAGAAGGAATCCGAAGGAGAGGTGGAGTTGTAGTCAATTGCTGAAGCATCCATTTCTTGCTGAATTCAATTCCAATGGTAAGGAAATTCAGGAATCTAATAATTCAAGTTCACCAACTAGTATTCTTGAGCAAGGCTTTTGGAATTCTGTGGAAGAGTCAGAATCAGAATGCTTCTTTTTTGGGAATTTGGATCAGAAAAGTTTAGAGATTGAGAATTCGCCTGGTTGTAGGATCAGAAGGCTAGCTTTGTGTTCAGGGGATCCCAATTGGACATGGGATGATGACGAGGATTGGATCATAACTAGAGGTAATGAAGCAGGGGTTTCAACTAGTGATGATGTGTTGGATTTTGATGAGTTGGAAGAAAGCAATGTTAGTCGTAGAATTAGTTGTTATATTTGTGAGGATTATTGTAAATGTAGGGATTGTGTTAGTGTTGTAGTTAATAGTCTCAATTTTGAGAGAAGTGTTGTTGCTGAGATGATGCTTCCTTCAACATTAGATATTTTATAA 1224 0.451 MEWIRGTTIGHGSSATVYLATSRRSTTELSAVKSAELSLSQSQQLQREQRILSSLSSPHIVSYKGCDITKESNKLWFNLFMEYMPFGTLSQETRRHGGRLDEPAIAQYTWQVLQGLEYLHSNGVVHCDIKGSNILIGEDGAKIGDFGCAKLVTDPVAPIAGTPMFMAPEVARGEEQGCPCDVWALGCTVVEMATGFAPWPNVEDPVMVLYRVAYSGEVPEIPCFLSEEAKDFLGKCFRRNPKERWSCSQLLKHPFLAEFNSNGKEIQESNNSSSPTSILEQGFWNSVEESESECFFFGNLDQKSLEIENSPGCRIRRLALCSGDPNWTWDDDEDWIITRGNEAGVSTSDDVLDFDELEESNVSRRISCYICEDYCKCRDCVSVVVNSLNFERSVVAEMMLPSTLDIL. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05381 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Seca4g05381 407 Gene3D Transferase(Phosphotransferase) domain 1 2 303 - -
Seca4g05381 407 SMART serkin_6 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05381 407 Pfam Protein kinase domain 6 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05381 407 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 290 - -
Seca4g05381 407 ProSitePatterns Protein kinases ATP-binding region signature. 9 33 IPR017441 GO:0005524
Seca4g05381 407 SUPERFAMILY Protein kinase-like (PK-like) 3 294 IPR011009 -
Seca4g05381 407 ProSiteProfiles Protein kinase domain profile. 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05381 407 CDD STKc_MAPKKK 2 256 - -
Seca4g05381 407 FunFam Mitogen-activated protein kinase kinase kinase 17 2 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05381 Seca-Chr4 101234501 101235724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05381 1 348 MAP Kinase Kinase Kinase AT2G32510 51.111 4.32e-111 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca4g05381 Pkinase 1.2e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05381 K20716 - gmx:100797801 548.51