Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05378 ATGGCCCGAGGGGGTGGACTCTCCATTGATTCAGATCCAATTGGGAGCTTCTTCCACAACAACCCAATAGTTCTCAACTCTTTTCCTGAAGACACCACCATCAAGTGGAAACTTGGTCCCAAAATGGATGCCACCAAGAACGAGTCTTCTCCACCCACTACTCCAACCAGAACAACCTCCACCCTCCCTTTCCAAGTCAACCTTAGCTGCTCCCCTCCACCTTCCTCTCATGACAAGAGACCCCTCATCGATGCAATGGACCTCTTCCCTTACAAAGATAACAACCACCTTGCCTCTGCCTCTGCCTCTACCTCTGCACCTCCTTCACTTCACCTTCATCATACACATGATCATCATTCCCCCACTACTCCTATTTTGGAATTGAAAGTAAACACTGGTCTGAATCTTCATTTCACCAACACTAGCAGTGATCATTCCATGGTGGAGGATGACATATCACCTTATTTACAAGACAGAAAAGCTATGACTGAGCTAGCTGCTCTTCAAGATGAGCTTGAAAGAGTGAATGTGGAGAATAATCGGCTAAGGAACATGCTTGAACAGGTTAACAACAATTACCAAGCCCTGCAGATGCATTTGGTGAGTGTGATGCAGGGCCACAAGGTTGAGGAGGGTGAAGAGAAACAACAACAGTTTGATGGAAAATTAGAAGAGGAGAAACAAACTGGAAATGGTGGAGTTTTGGTTCCAAGGCAGTTTATGGATCTTGGATTGGCTACTAACGCTGATAACGATGAACCTTCTCATTCTTCATCTGTAGGAAGAAGTCAGGACCATTTAAAATCACCCAGAAATAATGTAGAAGTGGCTTCCAAGGAATTAAGCACTAGAAAGAATGGGAATGCTAGTGATGAAGCACAAGTGTTTGATCAAGACAAAAAGGAATTTGGAATGGGAATTGAAAGAGAGGATAGTCCCGCAGATCAAGGTTTAACTTCTAATAATGTTTCAAAGTTGAGTCCTTTAAAAAATGTTGAGCAAGCTGAAGCCACCATGAGAAAAGCAAGAGTTTCTGTTAGAGTTAGATCAGAGGCAGCAATGATAACTGATGGATGTCAATGGAGAAAGTATGGTCAGAAAATGGCCAAAGGAAACCCATGTCCAAGAGCATATTACAGATGCACCATGGCTGCCGGTTGTCCAGTGAGAAAACAGGTACAAAGGTGTGCTGAAGACAGAACAATACTAATCACAACATATGAAGGAAATCACAGCCACCCTTTGCCTCCTGCAGCTATGGCTATGGCACAAACAACTTCCTCAGCTGCAAGAATGCTGCTTTCAGGATCAATGTCAAGTGCTGATGGACTAATGAATGCAAACTTCCTCACAAGGACACTCCTTCCTTGCTCATCTAGCATGGCAACTATCTCAGCATCAGCTCCATTCCCAACTGTTACATTGGATTTGACACAGTCTCCAAACCCATTACAGTTCCCAAAGCCTCAAAGCCAGTTCCAAATCCCCTTCCCTGGTGTCCCTCAGGATTTCACAAACTCCCCAGCTTCATTACTGCCTCAGATATTTGGTCAGGCATTGTATAATCAGTCAAAGTTTTCTGGGCTTCAAATGTCACAAGATGTTGCAGACCCTTCCCAATTGGGTAATCAATCACAACAGGCACCACAACCACACCTTGCTGACACATTTAGTGCTGCCACTGCTGCTATTGCAGCTAATCCAAACTTTACTGCAGCTCTAGCAGCGGCTATCACTTCCATTATTGGGGGCACACAGCCAAATAACAATAACAGTAGTAGCAATAATAATAATGGCAACACTACTGCCAATAACAACAATGGCAATAGTACATCAAGCAACAACAACAATAGCAACGGAAGCAATAAAATCAACAATTCCAATTTGAACTAG 1893 0.4363 MARGGGLSIDSDPIGSFFHNNPIVLNSFPEDTTIKWKLGPKMDATKNESSPPTTPTRTTSTLPFQVNLSCSPPPSSHDKRPLIDAMDLFPYKDNNHLASASASTSAPPSLHLHHTHDHHSPTTPILELKVNTGLNLHFTNTSSDHSMVEDDISPYLQDRKAMTELAALQDELERVNVENNRLRNMLEQVNNNYQALQMHLVSVMQGHKVEEGEEKQQQFDGKLEEEKQTGNGGVLVPRQFMDLGLATNADNDEPSHSSSVGRSQDHLKSPRNNVEVASKELSTRKNGNASDEAQVFDQDKKEFGMGIEREDSPADQGLTSNNVSKLSPLKNVEQAEATMRKARVSVRVRSEAAMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHSHPLPPAAMAMAQTTSSAARMLLSGSMSSADGLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPKPQSQFQIPFPGVPQDFTNSPASLLPQIFGQALYNQSKFSGLQMSQDVADPSQLGNQSQQAPQPHLADTFSAATAAIAANPNFTAALAAAITSIIGGTQPNNNNSSSNNNNGNTTANNNNGNSTSSNNNNSNGSNKINNSNLN. 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05378 630 MobiDBLite consensus disorder prediction 42 81 - -
Seca4g05378 630 SUPERFAMILY WRKY DNA-binding domain 348 416 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g05378 630 Pfam WRKY DNA -binding domain 357 414 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g05378 630 MobiDBLite consensus disorder prediction 274 293 - -
Seca4g05378 630 ProSiteProfiles WRKY domain profile. 350 416 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g05378 630 MobiDBLite consensus disorder prediction 246 295 - -
Seca4g05378 630 MobiDBLite consensus disorder prediction 250 267 - -
Seca4g05378 630 MobiDBLite consensus disorder prediction 588 630 - -
Seca4g05378 630 MobiDBLite consensus disorder prediction 208 234 - -
Seca4g05378 630 Coils Coil 158 199 - -
Seca4g05378 630 MobiDBLite consensus disorder prediction 208 227 - -
Seca4g05378 630 Gene3D WRKY domain 340 417 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g05378 630 MobiDBLite consensus disorder prediction 46 74 - -
Seca4g05378 630 FunFam probable WRKY transcription factor 31 340 417 - -
Seca4g05378 630 MobiDBLite consensus disorder prediction 533 552 - -
Seca4g05378 630 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 145 600 IPR044810 GO:0003700
Seca4g05378 630 SMART WRKY_cls 355 415 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g05378 630 MobiDBLite consensus disorder prediction 98 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05378 Seca-Chr4 101124286 101126734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05378 130 598 WRKY Transcription Factor Family AT1G62300 52.058 6.28e-133 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca4g05378 WRKY 7.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05378 - - gmx:100127384 723.005