Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05359 ATGTCAATGGAAATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCACTCTAGCGGTTAGTGTTCCATGCAGCAGTTTGCTCACCATAGTGACGGTTCGATGTGGGCATTGTGCCAATTTGCTATCAGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGACCCTCAGAATTTTCTATTAATTATTGGTGAGACACAGAAACAGCACCTTATAAGCATTCAAGAACCAAGCAGCAAGGAACTGGGATCATCATCTTCAAAATGCAAAGCATTTGAGCCTGTAGAGCATGAGCAACCAAGGATTCCTCCCATTCGTCCTCCTGAGAAGAGACAACGTGTTCCTTCTGCTTATAATCGGTTCATTAAGGAGGAAATACAAAGAATTAAGGCTAGCAATCCAGATATTAGCCATAGAGAAGCATTCAGCACAGCAGCCAAAAACTGGGCACATTTTCCTCACATTCACTTTGGGTTAAAGCTGGATGGCAGTAAACAAGCAAAGTTGGACCAGGGGGACGTTGGTACTCATAAGTCTAACGGATTCTACTGA 573 0.4363 MSMEMMATERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQAFPPQDPQNFLLIIGETQKQHLISIQEPSSKELGSSSSKCKAFEPVEHEQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGSKQAKLDQGDVGTHKSNGFY. 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05359 190 CDD HMG-box_SF 120 156 - -
Seca4g05359 190 Gene3D High mobility group box domain 104 162 IPR036910 -
Seca4g05359 190 PANTHER PROTEIN YABBY 6-RELATED 1 175 IPR006780 GO:0007275
Seca4g05359 190 Pfam YABBY protein 7 166 IPR006780 GO:0007275
Seca4g05359 190 SUPERFAMILY HMG-box 109 159 IPR036910 -
Seca4g05359 190 FunFam Axial regulator YABBY 111 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05359 Seca-Chr4 100584586 100592955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05359 1 190 C2C2-YABBY Transcription Factor Family AT1G08465 63.212 6.59e-78 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Seca4g05359 YABBY 1.3e-71 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05359 K25796 - gmx:100785458 300.056