Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05353 ATGTTTGGAAGGGCACCGAAGAAAAGCGATAACACGAGGTACTACGAAATCCTCGGTGTTTCGAAGAACGCTTCACAGGATGATTTAAAGAAGGCTTACAAGAAAGCCGCTATCAAGAATCACCCTGACAAGGGAGGTGATCCTGAGAAGTTCAAAGAGCTTGCCCAAGCCTATGATGTTTTGAGCGACCCTGAAAAGCGGGAGATCTATGACCAGTATGGTGAAGATGCACTTAAGGAAGGGATGGGTGGCGGTGGCGGTGGCGGTGGCCATGACCCATTCGATATCTTCCAGTCATTCTTTGGTGGAAGTCCATTTGGTGGTGGTGGTAGCAGTAGAGGACGGAGGCAGAGACGGGGAGAAGATGTTGTTCACCCCCTGAAGGTCTCTTTGGAGGATCTATACACTGGGACGTCTAAGAAACTCTCTCTTTCAAGAAATGTCTTATGCTCAAAATGCAAAGGGAAGGGGTCAAAGACCGGAGCTTCGATGAAATGTTCTGGTTGTCAAGGTACTGGCATGAAGGTTTCTATTAGGCACCTCGGTCCCTCTATGATTCAGCAAATGCAGCATCCTTGCAATGAATGTAAGGGTACTGGGGAGATAATCAGTGAAAAAGACCGGTGCACACAATGCAAGGGAGAGAAGGTTGTTCAAGAGAAGAAAGTACTTGAAGTTAATGTGGAGAAGGGGATGCAGAATGGACAGAAGATTACATTCCCCGGTGAAGCTGATGAAGCTCCGGATACAATCACTGGGGATATCGTCTTTGTTCTACAACAAAAGGAACATCCGAAGTTCGTAAGGAAGGCTGAGGACCTTTTTGTAGAGCACACCCTATCACTCACTGAGGCTTTATGTGGCTTCCAGTTTGTTCTGACTCACTTGGATGGCCGGCAACTCCTTATCAAATCAGACCCTGGGCAAGTTGTCAAGCCTGATTCCTATAAGGCGATTGATGATGAGGGAATGCCAATGTATCAGAGACCCTTCATGAAGGGAAAGCTTTTCATTCACTTCACTGTGGAATTCCCTGAATTTTTGAGTCTTGATCAAGTCAAGGCCTTAGAGGCTGTTCTGCCACCAAAGCCTTCATCACCGTTGTCAGAGATGGAACTGGACGAGTGTGAGGAGACTACACTTCATGATGTCAATATAGAAGAAGAGACAAGGAGGAGGCAGCAAGCTCAGCAGGAGGCATATGATGAGGATGAAGATATGCACGGTGGTGCTCAGAGAGTACAATGTGCCCAGCAGTAA 1260 0.4714 MFGRAPKKSDNTRYYEILGVSKNASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYDVLSDPEKREIYDQYGEDALKEGMGGGGGGGGHDPFDIFQSFFGGSPFGGGGSSRGRRQRRGEDVVHPLKVSLEDLYTGTSKKLSLSRNVLCSKCKGKGSKTGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGEIISEKDRCTQCKGEKVVQEKKVLEVNVEKGMQNGQKITFPGEADEAPDTITGDIVFVLQQKEHPKFVRKAEDLFVEHTLSLTEALCGFQFVLTHLDGRQLLIKSDPGQVVKPDSYKAIDDEGMPMYQRPFMKGKLFIHFTVEFPEFLSLDQVKALEAVLPPKPSSPLSEMELDECEETTLHDVNIEEETRRRQQAQQEAYDEDEDMHGGAQRVQCAQQ. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05353 419 CDD DnaJ 14 63 IPR001623 -
Seca4g05353 419 SUPERFAMILY HSP40/DnaJ peptide-binding domain 121 265 IPR008971 GO:0006457|GO:0051082
Seca4g05353 419 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Seca4g05353 419 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Seca4g05353 419 FunFam DnaJ subfamily A member 2 264 346 - -
Seca4g05353 419 FunFam Chaperone protein dnaJ 3 217 257 - -
Seca4g05353 419 CDD DnaJ_C 121 348 - -
Seca4g05353 419 Hamap Chaperone protein DnaJ [dnaJ]. 10 407 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Seca4g05353 419 Pfam DnaJ domain 14 71 IPR001623 -
Seca4g05353 419 Coils Coil 386 406 - -
Seca4g05353 419 Gene3D - 264 346 - -
Seca4g05353 419 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 11 400 IPR044713 GO:0006457|GO:0030544
Seca4g05353 419 PRINTS DnaJ domain signature 15 33 IPR001623 -
Seca4g05353 419 PRINTS DnaJ domain signature 46 66 IPR001623 -
Seca4g05353 419 PRINTS DnaJ domain signature 66 85 IPR001623 -
Seca4g05353 419 SUPERFAMILY HSP40/DnaJ peptide-binding domain 267 356 IPR008971 GO:0006457|GO:0051082
Seca4g05353 419 CDD DnaJ_zf 150 216 IPR001305 GO:0031072|GO:0051082
Seca4g05353 419 FunFam DnaJ subfamily A member 2 150 216 - -
Seca4g05353 419 Pfam DnaJ C terminal domain 124 345 IPR002939 -
Seca4g05353 419 MobiDBLite consensus disorder prediction 380 419 - -
Seca4g05353 419 ProSiteProfiles Zinc finger CR-type profile. 137 221 IPR001305 GO:0031072|GO:0051082
Seca4g05353 419 FunFam dnaJ protein homolog 10 111 - -
Seca4g05353 419 SUPERFAMILY Chaperone J-domain 8 110 IPR036869 -
Seca4g05353 419 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 147 219 IPR036410 -
Seca4g05353 419 Gene3D - 150 216 - -
Seca4g05353 419 SMART dnaj_3 12 66 IPR001623 -
Seca4g05353 419 MobiDBLite consensus disorder prediction 380 410 - -
Seca4g05353 419 Pfam DnaJ central domain 150 216 IPR001305 GO:0031072|GO:0051082
Seca4g05353 419 Gene3D - 112 262 - -
Seca4g05353 419 Gene3D DnaJ domain 10 111 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05353 Seca-Chr4 100443348 100447141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05353 14 73 C2H2 Transcription Factor Family AT1G74250 42.029 3.23e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05353 K09503 - gmx:547558 682.174