Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05351 ATGGGTGTCTCAGGGAAGTGGATTAGAGCATTGGTTGGTCTAAAGAAATCAGAAAAGCCAAAGTTGAAGGATAAAAATAAGTTTGGCAAGTTTCACCATCAAAGAAAGCATTCCAATGAATTCGATAATGGTAAATTTCCAAACGAATTGGATAATGATGCTAAACCACCTATTGGAGACAACAATGGCCATACAGACCTTGATGCCCATTATTCTTCTACTTCACAACAAGCACATGATGCTGCACATTATCATCAAATTATGAGGGAGGAATGGGCTGCAATACGCATTCAAACAGCATTTCGAGGATTTTTGGCCAGAAGAGCACTACGAGCTTTGAAAGGATTGGTAAGGCTTCAGGCTCTAGTAAGAGGCCATGCAGTGAGAAAACAAGCAGCAATAACGCTCCGTTGTATGCAAGCTTTGGTGAGGGTTCAGGCTCGTGTTCGATCAAGGCATGTTCGCATGACTTTGGAAAGTCAAGCAGAAAAACAGAAACATCAGCAACAGCTTCCAAATGAAGCACGAGTTCGAGACATTGAAGAAGGATGGTGTGATAGTGTGGGATCTTCTGAAGAAATTCAGGCTAAAATATTGAAGAGACAAGAGGCTGCAGCAAAACGTGAGAGAGCCATGGCATATGCTCTAGCTCATCAGTGGCAGCCAGGACCAAGACAGCAGGCTGTTTCGTCTGGATTTGAACCAGATAAAAGTAGCTGGGGTTGGAATTGGTTGGAAAGGTGGATGGCTGTCCGTCCTTGGGAGAATCGCTTCGTTGACATTAGTCTGAGGGATGGAGTAACAGTACGTCAGACTGGAGCTATGGATGATAAAAATGGAAATAGACCTCAGTTAAGATCTGCTAACAAGAAACCATTTTCATCAAACATTCATCCAAACCTTACAAGTCACAGAACTGCTCCCACTCTTCCCGATGGCAGTGATTCTTCACCCAGCAAGTCAGCAGGTTTGCTAGAATCATCAACCACACAGCCTGTTAAGCCAGATTCTAAGGTAAATGTTGAACATCGTGTTGAAGAAGTTAAAGCAAAACCCGGAACTGGGTCAAGATCTTACAGTAATCCAAAGGAGAGAACATCACAGGCAGATAAGCAGGCCAAAAGACGATTATCGCTGCCTAACAGTGCAGGGGGTGGTCCTGGGTCTGAAACAGCCAGACATCTTATTAGAACAAATGTGAAAGGGACACCAAGCATGCAAAGGCCTAACAGGGATAAGCTTAAGCTCAACGGGAGAGGGGATGTGAATCTTACAAAACCAGTTCAACAACCCGGGGACATGTAG 1305 0.4414 MGVSGKWIRALVGLKKSEKPKLKDKNKFGKFHHQRKHSNEFDNGKFPNELDNDAKPPIGDNNGHTDLDAHYSSTSQQAHDAAHYHQIMREEWAAIRIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRSRHVRMTLESQAEKQKHQQQLPNEARVRDIEEGWCDSVGSSEEIQAKILKRQEAAAKRERAMAYALAHQWQPGPRQQAVSSGFEPDKSSWGWNWLERWMAVRPWENRFVDISLRDGVTVRQTGAMDDKNGNRPQLRSANKKPFSSNIHPNLTSHRTAPTLPDGSDSSPSKSAGLLESSTTQPVKPDSKVNVEHRVEEVKAKPGTGSRSYSNPKERTSQADKQAKRRLSLPNSAGGGPGSETARHLIRTNVKGTPSMQRPNRDKLKLNGRGDVNLTKPVQQPGDM. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05351 434 Gene3D - 92 132 - -
Seca4g05351 434 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
Seca4g05351 434 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
Seca4g05351 434 SMART iq_5 89 111 IPR000048 GO:0005515
Seca4g05351 434 SMART iq_5 112 133 IPR000048 GO:0005515
Seca4g05351 434 ProSiteProfiles IQ motif profile. 139 167 IPR000048 GO:0005515
Seca4g05351 434 PANTHER IQ-DOMAIN 5-RELATED 1 385 - -
Seca4g05351 434 FunFam IQ-domain 11 89 140 - -
Seca4g05351 434 MobiDBLite consensus disorder prediction 285 336 - -
Seca4g05351 434 MobiDBLite consensus disorder prediction 337 351 - -
Seca4g05351 434 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515
Seca4g05351 434 MobiDBLite consensus disorder prediction 35 49 - -
Seca4g05351 434 MobiDBLite consensus disorder prediction 272 434 - -
Seca4g05351 434 MobiDBLite consensus disorder prediction 29 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05351 Seca-Chr4 100393293 100400987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05351 1 393 IQD Protein Family AT3G22190 52.580 5.30e-120 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05351 - - gmx:100781346 603.594