Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05345 ATGGATGTTGATTCCTCGATGGTGCCGGAGGCCGATCACGATCCGGCCGTGCAGAACCACGCTGAAGGAGAGCAGCTGGCGGAACCGCCGTCTTCCGGTGGCGGATCTCCGGCGCAGCAACAACAACAGCAGCAGCAGGCGCCTGCTCAGGTACAGCAGAGTTCGGTGGTTGGGCCGAGGCTGGCGCCAACTTACACTGTGGTGAATGCAATTATGGATAAGAAGGAGGATGGACCGGGGCCGAGGTGCGGCCACACGTTGACTGCGGTGGCAGCCGTCGGGGAGGAGGGGACGCCTGGGTACATTGGTCCGAGGCTGATTTTGTTCGGTGGTGCTACTGCACTTGAGGGCAATTCTGCGGCTGCAGGGACTCCTTCATCCGCTGGAAATGCTGGCATACGTTTAGCTGGTGCCACGGCTGATGTCCATTGTTATGATGTGTTAACTAATAAATGGTCTAGGCTAACTCCCTTTGGAGAACCCCCAACACCGAGGGCTGCACATGTGGCAACCGCTGTGGGAACCATGGTGGTTATTCAGGGTGGTATTGGTCCTGCTGGTTTGTCAGCAGAGGACCTTCATGTTCTTGATCTCACTCAGCAATGGCCTCGCTGGCATAGAGTGTCTGTTCAAGGCCCCGGACCAGGGCCACGGTATGGACATGTAATGGCTTTGGTTGGGCAGAGGTATCTTATGGCAATTGGAGGCAATGATGGAAAGAGGCCTTTGGCTGATGTATGGGCATTGGACACAGCTGCCAAACCTTATGAATGGCGTAAGTTAGAGCCAGAAGGAGAGGGCCCACCTCCATGCATGTATGCAACTGCAAGTGCACGCTCTGATGGGCTCCTTCTGCTTTGTGGAGGGAGGGATGCCAATAGTGTTCCATTGGCAAGTGCATATGGACTTGCTAAGCATAGAGATGGTCGCTGGGAATGGGCAATTGCCCCAGGGGTCTCACCATCTCCAAGATATCAGCATGCAGCGGTATTTGTTAATGCAAGGCTCCATGTGTCTGGCGGGGCTCTTGGTGGAGGACGGATGGTCGAAGACTCATCAAGTGTTGCGGTATTGGACACTGCTGCTGGAGTTTGGTGTGATACAAAATCTGTTGTTACCAGTCCAAGAACTGGAAGATACAGCGCTGATGCAGCTGGAGGAGATGCTGCAGTTGAGTTGACTCGGCGTTGTAGACATGCAGCTGCTGCTGTTGGCGACCTAATTTTTATTTATGGTGGTTTACGTGGGGGAGTCTTGCTAGATGACCTACTTGTTGCTGAAGATCTTGCTGCCGCTGAAACAACAACTGCTGCTTCACATGCGGCGGCGGCAGCGGCTGCATCTAATGTACAAGCAGGACACTTGCCTGGAAGATATGGATATGGTGATGATAGGACAAGGCAAACAATGGCTGAAGCGGCTGCTGATGGTTCTGTTGTATTGGGAAATCCAGTTGCACCCCCAATGAATGGTGACATTTATACTGATATCAGCACCGAAAATGCCTTGCTTCAGGGACCTCGTACTTTGAACAGGCGAACTGCCAAAGGAGTTGAGTATCTAGTTGAAGCATCTGCTGCAGAAGCCGAAGCTATCAGTGCCGCATTGGCTGCTGCCAAGGCACGACAAGAGAATGGAGAAGTTGAATCGCCTGACAGAGACCGCGGGGCTGAGGCTACCCCAAGTGGGAAACAAACATCTTCCTTGATTAAGCCTGATTCTGTAGGGACAAATAACATCACTCCTGGTGGAGTTCGGTTGCATCACAGAGCTGTAGTTGTTGCTGCTGAGACTGGTGGAGCATTAGGTGGCATGGTTAGACAGCTTTCGATTGATCAATTTGAAAATGAAGGCAGGCGGGTCAGTTACGGGACCCCAGAAAGTGCAACTGCTGCTAGAAAATTATTAGATCGGCAGATGTCTATCAATAGTGTGCCTAAAAAGGTCATAGCACACCTCTTAAAGCCTCGTGGATGGAAACCACCAGTACGCCGACAGTTTTTCTTAGACTGTAATGAAATTGCTGATCTTTGTGATAGTGCTGAGCGGATATTTTCCAGTGAACCAAGTGTCTTACAACTTAGTGCACCAATTAAAATATTTGGGGATTTACATGGGCAGTTTGGGGATCTCATGCGTCTTTTTGACGAGTATGGTGCACCATCAACTGCTGGTGACATTGCATATATCGATTATCTATTCCTAGGAGATTATGTTGATCGGGGGCAGCACAGCTTGGAAACTATAACCCTTCTTCTTGCTCTGAAGGTTGAGTATCCCAACAATGTACATTTAATACGTGGAAACCATGAAGCTGCAGATATTAATGCCCTCTTTGGTTTCCGAATTGAGTGCATTGAGAGGATGGGTGAGAGAGACGGAATTTGGACATGGCATCGGATAAACCGGCTGTTTAATTGGCTTCCTCTAGCAGCTTTAATTGAGAAAAAAATTATTTGCATGCATGGTGGTATTGGCCGTTCAATAAATCATGTGGAACAGATTGAGAATATTCAGCGTCCAATTCCAATGGAAGCAGGGTCAATTGTGCTTATGGATCTATTGTGGTCTGATCCTACAGAGAATGACAGTGTGGAAGGACTGAGGCCAAATGCTAGAGGTCCTGGATTAGTTACTTTTGGGCCTGATCGGGTAATGGAATTTTGCAACAACAATGATCTTCAGCTAATTGTTCGTGCACATGAATGTGTGATGGATGGGTTTGAGCGTTTTGCCCAGGGACATCTGATCACACTTTTCTCAGCTACAAATTATTGTGGTACTGCAAACAATGCTGGGGCAATATTAGTTTTGGGTAGAGACCTTGTTGTGGTTCCTAAATTGATTCATCCATTACCACCTGCAATTTCTTCACCAGAAACGTCACCAGAACGTCATATTGAAGATACATGGATGCAGGAGTTGAATGCTAACAGACCACCAACTCCAACAAGAGGCCGTCCCCAAGTGACAAATGACCGAGGTTCGCTCGCCTGGATATAG 3003 0.4908 MDVDSSMVPEADHDPAVQNHAEGEQLAEPPSSGGGSPAQQQQQQQQAPAQVQQSSVVGPRLAPTYTVVNAIMDKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAAAGTPSSAGNAGIRLAGATADVHCYDVLTNKWSRLTPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQWPRWHRVSVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLAAAETTTAASHAAAAAAASNVQAGHLPGRYGYGDDRTRQTMAEAAADGSVVLGNPVAPPMNGDIYTDISTENALLQGPRTLNRRTAKGVEYLVEASAAEAEAISAALAAAKARQENGEVESPDRDRGAEATPSGKQTSSLIKPDSVGTNNITPGGVRLHHRAVVVAAETGGALGGMVRQLSIDQFENEGRRVSYGTPESATAARKLLDRQMSINSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVLQLSAPIKIFGDLHGQFGDLMRLFDEYGAPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWTWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENIQRPIPMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPETSPERHIEDTWMQELNANRPPTPTRGRPQVTNDRGSLAWI. 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05345 1000 MobiDBLite consensus disorder prediction 976 991 - -
Seca4g05345 1000 Gene3D - 33 258 IPR015915 GO:0005515
Seca4g05345 1000 MobiDBLite consensus disorder prediction 560 581 - -
Seca4g05345 1000 ProSitePatterns Serine/threonine specific protein phosphatases signature. 766 771 IPR006186 GO:0016787
Seca4g05345 1000 FunFam Serine/threonine-protein phosphatase 633 973 - -
Seca4g05345 1000 SUPERFAMILY Kelch motif 136 426 IPR015915 GO:0005515
Seca4g05345 1000 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 1000 - -
Seca4g05345 1000 PRINTS Serine/threonine phosphatase family signature 803 829 IPR006186 GO:0016787
Seca4g05345 1000 PRINTS Serine/threonine phosphatase family signature 765 789 IPR006186 GO:0016787
Seca4g05345 1000 PRINTS Serine/threonine phosphatase family signature 697 724 IPR006186 GO:0016787
Seca4g05345 1000 PRINTS Serine/threonine phosphatase family signature 732 759 IPR006186 GO:0016787
Seca4g05345 1000 PRINTS Serine/threonine phosphatase family signature 915 931 IPR006186 GO:0016787
Seca4g05345 1000 PRINTS Serine/threonine phosphatase family signature 893 913 IPR006186 GO:0016787
Seca4g05345 1000 SUPERFAMILY Metallo-dependent phosphatases 654 960 IPR029052 -
Seca4g05345 1000 Gene3D - 633 972 IPR029052 -
Seca4g05345 1000 MobiDBLite consensus disorder prediction 1 58 - -
Seca4g05345 1000 Pfam Calcineurin-like phosphoesterase 697 904 IPR004843 GO:0016787
Seca4g05345 1000 Pfam Galactose oxidase, central domain 217 270 - -
Seca4g05345 1000 MobiDBLite consensus disorder prediction 543 582 - -
Seca4g05345 1000 SMART pp2a_7 669 953 IPR006186 GO:0016787
Seca4g05345 1000 MobiDBLite consensus disorder prediction 32 58 - -
Seca4g05345 1000 Gene3D - 259 455 IPR015915 GO:0005515
Seca4g05345 1000 MobiDBLite consensus disorder prediction 976 1000 - -
Seca4g05345 1000 PIRSF STPPP_BSU1 34 1000 IPR012391 GO:0004721|GO:0009742
Seca4g05345 1000 MobiDBLite consensus disorder prediction 545 559 - -
Seca4g05345 1000 Pfam Kelch motif 323 369 IPR011498 GO:0005515
Seca4g05345 1000 CDD MPP_Bsu1_C 649 951 IPR041758 -
Seca4g05345 1000 FunFam Serine/threonine-protein phosphatase 61 258 - -
Seca4g05345 1000 FunFam Serine/threonine-protein phosphatase 262 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05345 Seca-Chr4 100285065 100298107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05345 661 896 Calmodulin-binding Proteins AT5G63870 29.412 1.86e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05345 - - gmx:100790406 1810.81