Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05342 ATGTCTTTAACCTTTCAAGAGCCAACACCTGATCCCTTGCCTCAATTTGATAACACTTATGAATGGATTCCTCAAGAAGGGCAATTATTTAATAGTGATGTTGATGCTTATAACTTTTATCATGAATTTGCACGAAAAAACGGTTTTTCGATTAGACGTGATCATACTTACAAATCTAGTAAGAATCAGATTGAGGAGAATCCGTTAGGTATTTATAAAAGGGAATTTGTTTGTCATCGTGCCGGTTCGGTTAAGGAGCATAGAATTGTTGAAGGGAATAGTCAATGGAAACGAAAAACTTCAAGATGTAATTGTGGTGCAAGGATGTTGATTGCGAAAAGAATTATTGGTTTTGAGGAAAAATGGGTGGTTAAATTGTTGAAACAAGCTCACCTCCAAGAGTTTTTAATATGA 414 0.3502 MSLTFQEPTPDPLPQFDNTYEWIPQEGQLFNSDVDAYNFYHEFARKNGFSIRRDHTYKSSKNQIEENPLGIYKREFVCHRAGSVKEHRIVEGNSQWKRKTSRCNCGARMLIAKRIIGFEEKWVVKLLKQAHLQEFLI. 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05342 137 Pfam FAR1 DNA-binding domain 38 132 IPR004330 -
Seca4g05342 137 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 22 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05342 Seca-Chr4 100276270 100276683 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g05342 FAR1 4e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05342 - - ccaj:109802755 189.889