Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05339 ATGCTGACCTGCCTTCCAAGACTTAGATGTGTTTCTTTCTTGTATTCTTTTCCCAAATTGACCAACAATGTAAAGCAAATTCATGCCCAATTAATCACCAATGGTCTGAAATCCCCGTCCCTCTTGGCCAAGTTGATTGAACATTATTGTGGCTCACCATACCAACACATTGCCTGCAATGCACATTTGGTGTTCCAGTACTTCAACCAGCCACACTTGCTTCTCTTCAATACTTTGATAAGATGTGCTCAACCCAAGGACTCTATTCTTATTTTCCGAAATGAGTTTTCAAGGGGAGTCATGCTTTTTGATGATTACACTTACAATTTTGTTCTTGGAGCCTGTGCACGCTTTCCTTCAGCTTCAACATTATGGGTAGAACAAAGACCAAAGAGGGAGGACTATGAGTCTGAGCATTTGAAGAAACCAATAGAGACTGTACTCATGGCTGTTGTACCGGATAATCTGTACCTTTCCTTCCTAAACATTGTGGAAGGCGTAAGAGATCATACAAGGATGATTATGATAAATGACTTCTCAGCTTTTCCAGTCAATGCAAAAGATGATCAAGTTGGGTCATATTGGTATCATGAAGGAACACAAACATATTTTGATGATATAAATCACTATAAGGCAATAAAGGCCATGTGCAAGCTTTCTTGTGGTGTTTGTGACAGGATTGAACAGTAA 690 0.3957 MLTCLPRLRCVSFLYSFPKLTNNVKQIHAQLITNGLKSPSLLAKLIEHYCGSPYQHIACNAHLVFQYFNQPHLLLFNTLIRCAQPKDSILIFRNEFSRGVMLFDDYTYNFVLGACARFPSASTLWVEQRPKREDYESEHLKKPIETVLMAVVPDNLYLSFLNIVEGVRDHTRMIMINDFSAFPVNAKDDQVGSYWYHEGTQTYFDDINHYKAIKAMCKLSCGVCDRIEQ. 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05339 229 PANTHER ZINC FINGER PROTEIN 598 175 224 IPR044288 GO:0061630|GO:0072344
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05339 Seca-Chr4 100192941 100196905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05339 163 228 C2H2 Transcription Factor Family AT3G62240 53.030 3.53e-20 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05339 - - lja:Lj3g3v1294400.1 226.098