Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05337 ATGGATGAAATTGATGTCCCTTCTCATTTCCTCTGCCCCATTTCCCTGCAACTTATGAGAGACCCTGTCACAGTTTGCACAGGAATCACTTATGACAGAGAAAACATAGAGAGATGGTTATTTTCATGCAAGAACAAAACTTGCCCTGTTACCAAACAACCCCTTTTAGACACTGACCTTATTACCCCAAATCACACTCTACGTAGATTGATCCAATCTTGGTGCACCCTTAATGCTTCTCTTGGTGTTGAACGCATTCCAACTCCAAAGCCACCAATTGACAGAACCCAAATTGTGAAACTCCTCTCTGAAGCAAAGAGGTTCCCAGATAAGCAACTCAAATGCCTTAGAAGGCTTAGATCAATTGCTTTTGAAGGTGAAAGGAACAAAAACTGTTTGGAATCTGCAGGGGCAATAGACTTCTTGGCTTCAACAATGAAGAATAACAGCATTAACACACAACAAGATTCAGCTGTTCTGAGTGAAGCAGCTATTGAAGTTTTGTTTCATCTAAATCCTTCAGAGACTCAGCTTAAGAATCTGGTAAACAATGAGAGCATTCAATTTATTGAGTCTTTGTTTCATATGTTGAGGCTTGGGAACTACCAATCTAGAGCTTATGCTACTATGCTATTGAAGTCGGCATTTGGGGTAGCTGATCCAATCCAATTGATAAGTGTGAAAACAATTCTGTTTGAGGAAATAATGAGAGTGCTTCGTGATCAGATTTCACAACAGGCTTCAAAGGCTGCATTGAAGCTTATTGTGGAGCTTTGTCCATGGGGAAGAAACAGAATCAAAGCTGTTGAAGGTGGTGCAGTTTCAGTCCTAATTGAGCTTCTTCTTGAAACCTCAGAGAGAAGAGCATGTGAACTTATGTTAATAGCTTTGGATCAACTTTGTGGTTGTGCAGAAGGGAGGGCAGAGTTGTTGAATCATGGGGCAGGAGTGGCTATTGTGTCAAAGAAAATTCTAAGGATTTCTCATGCAGCAAGTGATAGAGGGGTTAGAATTTTGGCCTCAATTTGTAGGTATTCGGCTAATTCTAGAGTAGTTCATGAAATGTTGCAAGTTGGGGCTGTGTCCAAGTTATGTTTGGTGCTTCAAGTGGATAGCAGTTTCAAGACAAAGGAAAGGGCAAAGGAGATACTCAAATTGCACTCTGCTGTTTGGAAGAATTCACCATGTATTCCTGTTCCTTTGTTATCATCCTATCCATGA 1221 0.407 MDEIDVPSHFLCPISLQLMRDPVTVCTGITYDRENIERWLFSCKNKTCPVTKQPLLDTDLITPNHTLRRLIQSWCTLNASLGVERIPTPKPPIDRTQIVKLLSEAKRFPDKQLKCLRRLRSIAFEGERNKNCLESAGAIDFLASTMKNNSINTQQDSAVLSEAAIEVLFHLNPSETQLKNLVNNESIQFIESLFHMLRLGNYQSRAYATMLLKSAFGVADPIQLISVKTILFEEIMRVLRDQISQQASKAALKLIVELCPWGRNRIKAVEGGAVSVLIELLLETSERRACELMLIALDQLCGCAEGRAELLNHGAGVAIVSKKILRISHAASDRGVRILASICRYSANSRVVHEMLQVGAVSKLCLVLQVDSSFKTKERAKEILKLHSAVWKNSPCIPVPLLSSYP. 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05337 406 FunFam RING-type E3 ubiquitin transferase 1 84 - -
Seca4g05337 406 SUPERFAMILY RING/U-box 3 78 - -
Seca4g05337 406 CDD RING-Ubox_PUB 7 60 IPR045210 -
Seca4g05337 406 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Seca4g05337 406 SUPERFAMILY ARM repeat 98 381 IPR016024 -
Seca4g05337 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Seca4g05337 406 PANTHER WDSAM1 PROTEIN 3 398 IPR045185 GO:0061630
Seca4g05337 406 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Seca4g05337 406 Gene3D - 96 393 IPR011989 -
Seca4g05337 406 Pfam U-box domain 6 76 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05337 Seca-Chr4 100186393 100187613 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05337 2 406 U-box Gene Family AT2G35930 55.012 2.67e-162 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05337 - - gmx:100778012 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05337 4 100186393 100187613 Seca4g05337 4 100186393 100187613 ECH
Seca4g05337 4 100186393 100187613 Seca4g04535 4 83475764 83477323 PCT