Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05336 ATGGCTGAAATTGAAATCCCTCAATTTTTCGTTTGTCCAATTTCGCTTCAGATCATGAAGGACCCTGTGACAACAGTGACAGGCATAACATACGACAGAGAAAGCATCGAACACTGGTTGCTAACTGCAAAAAATTGCACTTGCCCTGTTACCAAGCAACCATTACCAAGAAGCACAGAGTTTCTAACACCAAACCACACTCTTCGAAGATTAATCCAAGCATGGTGTTCAGCAAACTCATCAAATGGCGTTGACCGTATTCCAACCCCGAAATCCCCATTAGACAAAGCTCACGTTGAGAAACTCGTGAAGGATCTTGATTCTCCACGCTGTTTTCAATTCACACTTGAGAAATTACATGCTCTTGCAACAGAGAGTGAGAGGAACAGAAGATGCATGGATGAATCAGGAGTAGCAAAAGCCATGATTCGTTTGATTACAAAGAGTTTCAAGCAAGGTAACACAACTTTCCTTGAAGAATCTCTGAGAATCCTTCGTTTACTCTGGAGTGATAATGTTAACATGAAACGCTTAATTGATGAAAGCTTTGACTTTCTCAACTCGTTGACTTGGATTTTGCAACTTCATCACAACGATGTCAAGGTGATAAATGAAGCAATGCCTATAATGAAATTGGCAATTGAAGTGAAAGATTCAACCTTTTTGGGTAACTTAAAGGTTGAATTTTTCAGGGGAATTGTCATGAGTGTACTAAAAAATAGAGCAATTTCTCAGCAGGCTATTAAATCTGCATTGCATGTACTTATAGAAACATGTCCTTTGGGGAGAAATAGGATGAAGATTGTGGAAGCTGGTGCAGTAACAGAACTCATTGAGCTTGCACTTGAGAAATTGGAAAAGAGTGTAACAGAGCTTATATTTATACTTTTGGCACATCTCTGTTCTTGTGCTGATGGGAGAGAACAGTTTCTGAAGCATGCAGGGGGGATAGCAGTGCTTTCTAAGAGAACATTAAGGGTTTCTCCAACAACAGATGATAGAGCTCTTCATGTGTTTTCATTGATTTCAAAATACTCAGCATCTAATGAGGTTGTTCAAGAGATGTTGAGGGTTGGTGCTGTGTCAAAGCTTTGCATGGTGATGCAAGCAGATTGTGCTTCTTATTTGAAAGAAAAGGCAAGAGGTATACTTAGGTTACACTCAAGAGCTTGGAATGATTCTCCTTGCATTCAAGTGTATTTGTTAACAAGACACCAAAGGTGA 1224 0.3954 MAEIEIPQFFVCPISLQIMKDPVTTVTGITYDRESIEHWLLTAKNCTCPVTKQPLPRSTEFLTPNHTLRRLIQAWCSANSSNGVDRIPTPKSPLDKAHVEKLVKDLDSPRCFQFTLEKLHALATESERNRRCMDESGVAKAMIRLITKSFKQGNTTFLEESLRILRLLWSDNVNMKRLIDESFDFLNSLTWILQLHHNDVKVINEAMPIMKLAIEVKDSTFLGNLKVEFFRGIVMSVLKNRAISQQAIKSALHVLIETCPLGRNRMKIVEAGAVTELIELALEKLEKSVTELIFILLAHLCSCADGREQFLKHAGGIAVLSKRTLRVSPTTDDRALHVFSLISKYSASNEVVQEMLRVGAVSKLCMVMQADCASYLKEKARGILRLHSRAWNDSPCIQVYLLTRHQR. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05336 407 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Seca4g05336 407 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Seca4g05336 407 CDD RING-Ubox_PUB 7 59 IPR045210 -
Seca4g05336 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Seca4g05336 407 PANTHER WDSAM1 PROTEIN 3 398 IPR045185 GO:0061630
Seca4g05336 407 SUPERFAMILY ARM repeat 96 381 IPR016024 -
Seca4g05336 407 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Seca4g05336 407 SUPERFAMILY RING/U-box 4 84 - -
Seca4g05336 407 Gene3D - 99 394 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05336 Seca-Chr4 100172789 100174012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05336 3 397 U-box Gene Family AT2G35930 42.893 4.31e-107 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05336 - - gmx:100778547 637.106