Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05333 ATGCTGGAGCAGGTAGTGAAATCTTCTGCTCATCCATCACGCATCTCTGACTTGGTTGGGACTGAGTTGCTTTTTCGAGTTGAGCGAAAGGATGAACCAACATTTACCTATGAGGAATGCTTCCGAGTGAAGAGGGTGTGCCTTGATCCTGATATTATCGCGGACTATAAAAGTGAATTAGATGATCAGACTCCATTGCAGATTATTAGGATCTGGACCATCCCTTTCTGTTGTGCTGCTTCCAAAATCCTATCTATTGAAATGGTGTTCATGGATGCCCAGGGAACAAAGATTCAGGATTCTGTTAGTAGGGATCTTTTGAAAATATTGAACTTGAGCTTGGAGGAAGGTGGCTTTTACTATATAAGTTATGTTTTAGTTGTTGCCAACGACGGGAATGATAGACCAACAAGGCATGCATACCGCCTGGTGATTGAAAGTCGAAGTCATGTGGTTAAGGCTGAACGTCTAACTTATACTAAGTTTGGGTTATCTCCTTTAACTTGCAGTGATCTTGTGAGGACGAAAAAGGATACAAAGCATCTTGTGGACAAAGTTGGGTTACTGACTTCTATCTCTTGTGAGAGAGAGTACACTAAAGATGACAAAGATATCCTAGCTATTTACATGGAAATCATTGATCCACGTAAGCTTCAATTCGAGACTAAGGGGAAGGTTGAATGTGTTGTCTATGATAATTTTGTTGAAGATGTGGTAAAATTCCTTCGATCCAACGGACCCTGCACCCCTATTATTGTAGTACAAATGGCAAGAATAGTTCCAGATGCTCAAGTTCTTTTTGGTAATGTTGGGATTGAAACTGTGCAGCATGTGAGTAGGATTCTATTTAACCCACCATTACCAGACGTTTTGGATATGCATGAATGGTTACTACTGAGTGGGATAACTGTTGATGGTAGAATTCAATACAGAAATCTGGAAATTCCATGTGTAAGCCTATGGGATGAATTTCTATATTACTATCACAAGAAAGACATAGGTGAACTTAACAAACAAGGCAAGGGTGGTTGCTTCGTTATATGTGCCACTATCACTAGCTTGGTGGAAAATGAGGCCCGGTGGTACTTAGCATGTAGGCCTCATGCTTGCAGCTCTATGGCTAGCTCCATCTACACATGTGATGGAGATTTTTCAATTATCCCCAAGTTCTCTGTGAAAGTTGAGGTGTCAGATAGAATAGAGAATTCTCAGTCCACCAACTACCCAGATGTCTTCAACCGCCTCATTGGTAAGCGTATGCTGTTTGTGGTTGAAACAAAAAGCTTTACTGATGTTCATGAAGGTTGTTTCAAGGTCCTTATAACTTGTGATGACAAATAA 1341 0.4064 MLEQVVKSSAHPSRISDLVGTELLFRVERKDEPTFTYEECFRVKRVCLDPDIIADYKSELDDQTPLQIIRIWTIPFCCAASKILSIEMVFMDAQGTKIQDSVSRDLLKILNLSLEEGGFYYISYVLVVANDGNDRPTRHAYRLVIESRSHVVKAERLTYTKFGLSPLTCSDLVRTKKDTKHLVDKVGLLTSISCEREYTKDDKDILAIYMEIIDPRKLQFETKGKVECVVYDNFVEDVVKFLRSNGPCTPIIVVQMARIVPDAQVLFGNVGIETVQHVSRILFNPPLPDVLDMHEWLLLSGITVDGRIQYRNLEIPCVSLWDEFLYYYHKKDIGELNKQGKGGCFVICATITSLVENEARWYLACRPHACSSMASSIYTCDGDFSIIPKFSVKVEVSDRIENSQSTNYPDVFNRLIGKRMLFVVETKSFTDVHEGCFKVLITCDDK. 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05333 446 Gene3D - 64 153 IPR012340 -
Seca4g05333 446 CDD RPA1_DBD_A_like 68 143 - -
Seca4g05333 446 Gene3D - 161 302 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05333 Seca-Chr4 100142457 100148236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05333 83 417 Core DNA Replication Machinery Family AT5G08020 20.513 7.78e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05333 - - lja:Lj1g3v3385890.1 182.956