Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05332 ATGGCTATGGTTGTTGGGCTTTTTTATCCGATCAGTAGTTTGTGTGGGCGTCGTCAAAATTGGAGGTTAAGGGTAAAACTTGTGAGGCTCTGGAAAATGACATTTGTGGCCAATCCCAATGACCCGTATGCAACTCAAATGGTTTTCGTTGATGAAGAGCGTGGTAGGATTGAGGTAACGGTCCCCAAACAACACATGAACAGATTTAATCATTCTTTGGTGGAGGGACAGATATATAACATCACCAATTTCGGCCTACTTCACAACTCTGGGAAGTTCAGAGCAACTGTCCATGAGTTTAAGTTGATATTCAATGCCACAACGAGGGTCATTCCTAGTCAAAATGTGTCCATTCCCTTCTCTGGATATGCTTTGACGAAGACTTGTGATATAAAGAAGACCAATGGGCGTTCAAATTATCTTTTTGAGTTCATGGGCATTGTTACTGCTGTTTCGAAGGAGTTGAACATAAGCAAGGAGGGGAGGCAGACACGGCTCATGTTGCTTGATTTAGTGGATGAGATGTATAAACCTATTTAG 540 0.4222 MAMVVGLFYPISSLCGRRQNWRLRVKLVRLWKMTFVANPNDPYATQMVFVDEERGRIEVTVPKQHMNRFNHSLVEGQIYNITNFGLLHNSGKFRATVHEFKLIFNATTRVIPSQNVSIPFSGYALTKTCDIKKTNGRSNYLFEFMGIVTAVSKELNISKEGRQTRLMLLDLVDEMYKPI. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05332 179 SUPERFAMILY Nucleic acid-binding proteins 8 117 IPR012340 -
Seca4g05332 179 Pfam Domain of unknown function DUF223 47 134 IPR003871 -
Seca4g05332 179 Gene3D - 8 115 IPR012340 -
Seca4g05332 179 CDD RPA1_DBD_A_like 22 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05332 Seca-Chr4 100140180 100141205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05332 10 179 Core DNA Replication Machinery Family AT2G06510 24.138 3.03e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05332 - - lja:Lj0g3v0341019.1 145.591