Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05327 ATGGCGACGTACTTTCATGGCAGCACAACTTCAGATATCAATTCTTCTTCTTCTGATGCCTTGCAGACACTTCACCTTATGAACCCAACCTACGTACCCTACCCTGACGCGCCACACCACCCAACGCCCAACATGATCCTCCTCAATCACCCCAACGCGCTCAACCTCGCTAGTTTCCCCCACGCGCCGCCATTTCCGACATCTGCTTCCCCCAACCACCACCACCACCACCAACAACAACACCCTGTGATTCACGGGGTAACTAGCGTCTTCGGATCCACCGACTCCGACGACCACACACGACCACCGTCTTCCTCCTTGTTCGGCCACCACGACATCTCTGCAACCACCGCCTTCCACGGCTTCTCTCCCGCCGCCGCCGCGCCTCGAGTCCACTATAACTTGTGGAGACCGGTGATCAATCAACCGTCGTCCACGGCAGAGACAACCGCACCTACCAGTGCGGTTGATGGCGGTTACCGGCGGCCAAGCCAGCAGGGGTTGTCGCTGAGCCTTTCCTCGGAACAAACCGCTTATAGACCACTTTCCGGCGAGATTGAAGTTCCGGTTACCGGAATTGGGAACTCTCCGACGTCGGTTTCGAACGGAGTTTCAAGCGTGATTTTGGGGTCGAAGTATTTGAAGGCAGCGCAGGAGGTTCTTGATGAAGTTGTTAACGTGGGGAAGGGAATCTACAGAGATGAAAAATTCGCAGAAGGGGGAAATAATAAAGATAAGATGAGAGCCAATAGAGAATCGACACCTGGAGGTGGCGAAGGTTCAAGTGGTGCAGGGAAACAAGTGGCTGAACTCAGTACGGCTCAGAGACAGGAACTTCAGATGAAGAAGTCCAAGCTTGTCAGCATGCTCGATGAGGTAGAGCAGAGGTACAGGCAATATCACCACCAAATGCAGATTGTGATATCATCGTTTGAACAGGCAGCGGGTTTTGGGGCGGCAAAATCTTACACAGCTATTGCCTTAAAGACAATCTCGAAGCAATTTCGATGTCTTAAAGATGCAATCTGTGGACAAATCAAAGCGACGAGCAAGACATTGGGTGAAGATGATTGCTTAGGGGTTAAAGTAGAAGGGTCGAGGCTAAGGTATGTGGACCACCATCTAAGGCAACAACGGGCATTGCAACAGTTAGGAATGATCCAGCCTAATGCTTGGAGGCCCCAAAGAGGCTTGCCTGAACGAGCTGTTTCTGTTCTTCGTGCTTGGCTTTTTGAGCATTTCCTTCACCCCTATCCTAAGGACACTGATAAAGTTATGCTTGCTAAACAAACGGGACTTGCTAGGAGCCAGGTATCAAACTGGTTTATTAATGCCCGAGTTCGGCTGTGGAAACCAATGGTTGAAGAAATGTACATGGAAGAAGTGAAGGAGCAGGAACGTGCTAATGGTTTAGATAACACCACATCAAAAGAATCGGGCAAGGAGCCAAATGTTACAACCGAATCAGGTGAAATCAAACTTCCCCAATCAGAGCAACAAAGCTTCAACAACCGAAACACTACTTCACCAACTGAGATCTCAACAAACCATCTTGTACCATCATCATCTGACATCCAAATTATGAGTCCAAACAAACCAAGATGTTCAGAAATGCAGAACTCTCCAAGTAGCATCCTTTCAGTGGACATGGAAATGAAGCATGGAGATCAAACCACTAGAGAAGCCAATAACAACACAAAGTTTAGCATTGACCAAAGGCATCACCACCACCACAAAGATGACTACCCTTTAATTACTGGCAATGCAAACCATGGTGGGGGTTTTGGTGCTTTCTCCATGGAAGACATTGGAAACAGGTTTAATGTCACTGAACAATTGGCTTCCACTAGGTTCCATGGGAATGGTGTTTCTCTCACTCTAGGACTTCCTCACAATGAGAACCTCCCTATCTCAGCAGGAACTCAACATGGATTTCTCTCACAGAATATGCATTTAGGAAGGAGACTTGAGATTGAAACCAATGGAAATGAGTTTTGTGCCATCAATACTACTCCACCTGCTTCCCACTCAGGAAACAGTTATGAGAGTATTGACATTCAAAACAGAAAGAGGTTTGCTGCCCAATTATTGCCAGATTTTGTTGCCTGA 2109 0.4794 MATYFHGSTTSDINSSSSDALQTLHLMNPTYVPYPDAPHHPTPNMILLNHPNALNLASFPHAPPFPTSASPNHHHHHQQQHPVIHGVTSVFGSTDSDDHTRPPSSSLFGHHDISATTAFHGFSPAAAAPRVHYNLWRPVINQPSSTAETTAPTSAVDGGYRRPSQQGLSLSLSSEQTAYRPLSGEIEVPVTGIGNSPTSVSNGVSSVILGSKYLKAAQEVLDEVVNVGKGIYRDEKFAEGGNNKDKMRANRESTPGGGEGSSGAGKQVAELSTAQRQELQMKKSKLVSMLDEVEQRYRQYHHQMQIVISSFEQAAGFGAAKSYTAIALKTISKQFRCLKDAICGQIKATSKTLGEDDCLGVKVEGSRLRYVDHHLRQQRALQQLGMIQPNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDTDKVMLAKQTGLARSQVSNWFINARVRLWKPMVEEMYMEEVKEQERANGLDNTTSKESGKEPNVTTESGEIKLPQSEQQSFNNRNTTSPTEISTNHLVPSSSDIQIMSPNKPRCSEMQNSPSSILSVDMEMKHGDQTTREANNNTKFSIDQRHHHHHKDDYPLITGNANHGGGFGAFSMEDIGNRFNVTEQLASTRFHGNGVSLTLGLPHNENLPISAGTQHGFLSQNMHLGRRLEIETNGNEFCAINTTPPASHSGNSYESIDIQNRKRFAAQLLPDFVA. 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05327 702 MobiDBLite consensus disorder prediction 465 517 - -
Seca4g05327 702 MobiDBLite consensus disorder prediction 82 109 - -
Seca4g05327 702 MobiDBLite consensus disorder prediction 144 172 - -
Seca4g05327 702 Gene3D - 395 472 - -
Seca4g05327 702 Pfam Homeobox KN domain 409 448 IPR008422 GO:0003677|GO:0006355
Seca4g05327 702 SMART prehox3 202 344 IPR006563 -
Seca4g05327 702 Coils Coil 276 296 - -
Seca4g05327 702 ProSiteProfiles 'Homeobox' domain profile. 389 452 IPR001356 GO:0003677
Seca4g05327 702 MobiDBLite consensus disorder prediction 472 517 - -
Seca4g05327 702 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 73 478 - -
Seca4g05327 702 MobiDBLite consensus disorder prediction 62 109 - -
Seca4g05327 702 MobiDBLite consensus disorder prediction 237 252 - -
Seca4g05327 702 MobiDBLite consensus disorder prediction 237 269 - -
Seca4g05327 702 Pfam Associated with HOX 207 342 IPR006563 -
Seca4g05327 702 FunFam BEL1-like homeodomain protein 9 395 457 - -
Seca4g05327 702 CDD homeodomain 392 453 IPR001356 GO:0003677
Seca4g05327 702 SMART HOX_1 392 456 IPR001356 GO:0003677
Seca4g05327 702 SUPERFAMILY Homeodomain-like 393 459 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05327 Seca-Chr4 100004486 100009039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05327 182 503 Homeobox Transcription Factor Family AT2G16400 53.659 4.60e-103 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca4g05327 POX 2.3e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05327 - - gmx:100779075 924.08