Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05306 ATGGAAGGTATCCAGGAAGTCTCCATCTTGCTCTTTTTTGGTCTAATTATTACAATGGGTTATGGTGCTACAAACCCAAATGATCTCAAAGTTCTGAATGATTTCAGAAAAGGATTGGAGAATCCAGAGCTTCTGAAGTGGCCAGAAAATGGGGATGATCCATGTGGTCCTCCTTCATGGAATTACGTGTCCTGCTTGGGAGACAGAGTCAATCAGATTCAGGCTAAGAATCTGGGTCTCAAAGGATCATTACCTCAAAACTTTAACCAACTCTCAGAACTCTCCAATTTGGGTCTTCAACGCAATAACCTTAGTGGCATGTTGCCTTCTTTTAGTGGATTATCCAAATTGGAATTTGCTTTTTTGGACTACAATGCATTTGATGCTATCCCATCTGATTTCTTTAATGGACTCAGCAGCCTTAGGGTCTTGTCTTTGGAAGAAAATCCACTGAATGCGAGTAGTGGTTGGTCATTTCCTTTGGATTTAGAAAAATCAGAGCAATTAACCAATCTTTCTCTGGTGCATTGTAATTTGGTTGGAACATTGCCAGATTTTCTAGGCACATTGCCATCACTCACAAATCTGAGGCTTTCAAGTAACAGATTGTCTGGTCCCATTCCAGCTACTTTTGCTCAATCTTCAATCCAGGTTTTGTGGTTGAATGATCAAGAAGGAGGTGGGATGACAGGTCCTATTGATGTTATTGCTTCAATGGTTTTCCTAAGACAGCTTTGGCTACATGGAAACAAGTTCACTGGGACAATTCCAAAGAATATTGGAAATCTTACTTCCTTGCAGGAACTCAATGTCAATAGTAATCAACTTGTTGGCTTGATTCCAGAGTCCCTAGCTGAAATGGACCTTGAGATACTGGTGCTAAATAATAATAAACTAATGGGTCCAATACCAGAGTTTAAGGCTGCCAATTTTTCTTGTGATAACAATTTCTTTTGTCAACCTAAGCCTGGACTTGAATGTGCCCCTGAAGTAACAGCACTGCTGGATTTTCTGGATAATCTGAATTACCCATCATTTCTCATTTCTGATTGGTCAGGTAATAAACCATGCACAGGCAGCACAGGACCATGGTTTGGATTGAACTGCAATTCCAAGTCAGAAATATCTATTATCAATCTACCTAGACACAATCTCAACGGTACTCTAAGTCCCTCACTTGCTAAGTTAGATTCACTCCTTGAAATTAGACTTGCAGGAAACAATATAGGTGGTACAATTCCTAGTGATTTTTCTAAATTGAAGTCTTTGAGGTTGTTGGATTTAAGTGATAACAATCTTGAGCCTCCATTACCAAACTTTCATGATGATGTGAATGTTATTATTGCTGGTAACCCTTTTCTTCCCAATCACACTGGAGGAAGTCCCATGCCTATTAACAGCCCACCTTCACCACACAACCCATCACTTGCTCCATCCTCCCATGAGCTGCCTGTTCCAAGTCAGAGTTCAAGCTCAAATCAACCAGAACCAAATGGCTTCAACAGATTCAAAACAGTAGCAATAGTGGCTGGGGTAGCAGTGTTTGCTGTTGCTATTTTTGTTGTTTATCTTTTCTTATGTTGCAGGAAGAACAAGAAATCTTCCTTGGATGCTCCAAGTTCCATTGTGGTTCACCCTCGAGATCCATCTGATCCAGATAATGTGGTTAAAATTGCTGTTTCAAGCAACACTACTGGAAGTTTATCAGAAAAGACTGGGACAAGTTCTCTAAGTAACATGAGTGGTGAAACTCAAAACTCTCATCTAATTGAAGCTGGCAACCTTGTCATCTCAGTACAAGTACTACGCAAGGTAACCAAGGATTTTGCTTCAGAAAATGAGCTAGGCCGTGGTGGGTTTGGAACTGTTTACAAGGGGGAACTAGAAGATGGGACAAAAATAGCAGTGAAGAGAATGGAGCATGGGGTTATTAGCAGTAAGGCGCTAGAGGAGTTTCAAGCTGAAATAGCTGTTCTTTCCCAGGTCCGTCACCGGCATCTGGTTTCCTTATTGGGGTATTGCGTTGAAGGCAATGAAAGACTTTTGGTTTATGAATATATGCCTCTTGGTGCTCTAAGTCAGCACCTTTTTCATTGGAAGAGCTTGGATTTAAAGCCTTTGTCTTGGTCACAGAGGCTTGCAATAGCACTAGATGTTGCTAGAGGGATAGAATATCTTCATGGCCTTGCCCGCCAGACCTTTATCCATCGAGACCTCAAGTCTTCTAATATTCTTCTTGGTGATGATTTTCGGGCAAAAGTTTCGGATTTTGGTCTGGTGAAGCTTGCCCCGGATGGTGAAAAATCTGTAGTAACCAAGCTTGCTGGGACATTTGGATACCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACCACAAAAGCTGATGTGTTCAGTTATGGTGTGGTGTTAATGGAACTTCTGACTGGACTAATGGCACTTGATGAGAGCCGGCCAGAGGAAAGCCGGTACTTGGCTGAATGGTTTTGGCGAATCAAATCGAGCAAAGAAAAACTTATGGCTGCCATTGATCCAGTTCTGGAAGCAACTGAAGAGACTTTTGAGAGCATAACCATTGTAGCTGAACTTGCTGGACATTGCACTGCCAGGGAAGCAAGCCATAGGCCAGATATGAGTCATGCAGTCAATGTGCTTGCTGCATTAGTTGAAAAATGGCGACCAGTTGATGATGAATTAGATTACTACTCTGGCATTGACTACACTCGACCACTTCCCCAAATGTTGAGAATTTGGAAGGAAGCTGAAAGCAAAGAGTTTAGTTATACAGCTAATGTTGAAGACAGCAAAGGCAGTATTGCAGCCAGGCCTTCTGGATTTGCAGACTCTTTTACTTCTGCTGATGCTCGATGA 2871 0.4183 MEGIQEVSILLFFGLIITMGYGATNPNDLKVLNDFRKGLENPELLKWPENGDDPCGPPSWNYVSCLGDRVNQIQAKNLGLKGSLPQNFNQLSELSNLGLQRNNLSGMLPSFSGLSKLEFAFLDYNAFDAIPSDFFNGLSSLRVLSLEENPLNASSGWSFPLDLEKSEQLTNLSLVHCNLVGTLPDFLGTLPSLTNLRLSSNRLSGPIPATFAQSSIQVLWLNDQEGGGMTGPIDVIASMVFLRQLWLHGNKFTGTIPKNIGNLTSLQELNVNSNQLVGLIPESLAEMDLEILVLNNNKLMGPIPEFKAANFSCDNNFFCQPKPGLECAPEVTALLDFLDNLNYPSFLISDWSGNKPCTGSTGPWFGLNCNSKSEISIINLPRHNLNGTLSPSLAKLDSLLEIRLAGNNIGGTIPSDFSKLKSLRLLDLSDNNLEPPLPNFHDDVNVIIAGNPFLPNHTGGSPMPINSPPSPHNPSLAPSSHELPVPSQSSSSNQPEPNGFNRFKTVAIVAGVAVFAVAIFVVYLFLCCRKNKKSSLDAPSSIVVHPRDPSDPDNVVKIAVSSNTTGSLSEKTGTSSLSNMSGETQNSHLIEAGNLVISVQVLRKVTKDFASENELGRGGFGTVYKGELEDGTKIAVKRMEHGVISSKALEEFQAEIAVLSQVRHRHLVSLLGYCVEGNERLLVYEYMPLGALSQHLFHWKSLDLKPLSWSQRLAIALDVARGIEYLHGLARQTFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGEKSVVTKLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLMALDESRPEESRYLAEWFWRIKSSKEKLMAAIDPVLEATEETFESITIVAELAGHCTAREASHRPDMSHAVNVLAALVEKWRPVDDELDYYSGIDYTRPLPQMLRIWKEAESKEFSYTANVEDSKGSIAARPSGFADSFTSADAR. 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05306 956 Gene3D Phosphorylase Kinase; domain 1 570 686 - -
Seca4g05306 956 Gene3D Ribonuclease Inhibitor 329 457 IPR032675 -
Seca4g05306 956 FunFam receptor protein kinase TMK1 571 686 - -
Seca4g05306 956 MobiDBLite consensus disorder prediction 476 497 - -
Seca4g05306 956 Gene3D Transferase(Phosphotransferase) domain 1 687 901 - -
Seca4g05306 956 ProSitePatterns Protein kinases ATP-binding region signature. 615 637 IPR017441 GO:0005524
Seca4g05306 956 Pfam Leucine rich repeat N-terminal domain 329 370 IPR013210 -
Seca4g05306 956 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Seca4g05306 956 ProSitePatterns Serine/Threonine protein kinases active-site signature. 734 746 IPR008271 GO:0004672|GO:0006468
Seca4g05306 956 SMART serkin_6 609 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05306 956 Pfam Protein tyrosine and serine/threonine kinase 612 883 IPR001245 GO:0004672|GO:0006468
Seca4g05306 956 PANTHER OSJNBA0070M12.3 PROTEIN 9 956 - -
Seca4g05306 956 MobiDBLite consensus disorder prediction 563 582 - -
Seca4g05306 956 SUPERFAMILY L domain-like 329 439 - -
Seca4g05306 956 FunFam Leucine-rich repeat receptor-like kinase 329 457 - -
Seca4g05306 956 SUPERFAMILY L domain-like 24 307 - -
Seca4g05306 956 SUPERFAMILY Protein kinase-like (PK-like) 588 885 IPR011009 -
Seca4g05306 956 FunFam Receptor-like kinase TMK4 26 324 - -
Seca4g05306 956 ProSiteProfiles Protein kinase domain profile. 609 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05306 956 MobiDBLite consensus disorder prediction 458 497 - -
Seca4g05306 956 SMART LRR_typ_2 263 286 IPR003591 -
Seca4g05306 956 SMART LRR_typ_2 138 161 IPR003591 -
Seca4g05306 956 SMART LRR_typ_2 396 419 IPR003591 -
Seca4g05306 956 SMART LRR_typ_2 91 113 IPR003591 -
Seca4g05306 956 SMART LRR_typ_2 114 137 IPR003591 -
Seca4g05306 956 SMART LRR_typ_2 420 442 IPR003591 -
Seca4g05306 956 SMART LRR_typ_2 190 213 IPR003591 -
Seca4g05306 956 Gene3D Ribonuclease Inhibitor 26 323 IPR032675 -
Seca4g05306 956 CDD STKc_IRAK 615 885 - -
Seca4g05306 956 FunFam receptor protein kinase TMK1 687 904 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05306 Seca-Chr4 99430480 99434580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05306 45 890 Receptor kinase-like Gene Family AT1G56120 29.817 9.37e-82 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Seca4g05306 PK_Tyr_Ser-Thr 9.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05306 - - gmx:100785090 1532.69