Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05301 ATGGGGTCTCGAATGGATCAATACGAGATCATGGAGCAGATCGGTCGCGGAGCGTTTGGTGCTGCTATTCTCGTTAACCACAAGGCGGAGAAGAAGAAATACGTTTTGAAAAAAATCAGGCTTGCGCGGCAAACTGAACGCTGCAGAAGATCTGCTCATCAAGAGATGGCTCTTATTGCTAGAATTCAGCACCCTTACATTGTGGAATTCAAGGAGGCGTGGGTTGAGAAGGGTTGCTATGTCTGCATTGTAACTGGATACTGTGAAGGTGGAGACATGGCTGCGTTGATGAAAAAATCAAATGGGGTCTACTTTCCCGAGGAGAAACTCTGCAAGTGGTTCACTCAAATACTGTTGGCAGTAGAATACCTGCATTCAAATTTTGTTTTACACCGTGACCTAAAGTGTTCTAACATCTTTCTCACCAAGGATCAGGATGTTCGCCTAGGGGATTTTGGACTTGCTAAGACACTAAAAGCAGATGATTTGGCTTCTTCGGTGGTAGGAACTCCCAATTACATGTGTCCTGAACTGCTTGCAGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGGGTGCTGTATATATGAGATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTTGATATGGCTGGACTGATAAGCAAAATAAATCGTTCCTCTATTGGTCCTTTGCCTCCCTGTTATTCCCCATCCTTGAAAACACTGATAAAGGGCATGCTGAGAAAAAATCCTGAGCATCGTCCAACAGCATCTGAAATCCTAAAGCACCCTTATTTGCAGCCTTATGTTCATCAATATTGTTCATCTTTCTGTCCTCCAGCAGCCTGTTCTCCTGAAAAGCCAATTTCAGCTGTCCATGATCCTCAAAAAAATATGGCAGAAAGTCAAAACAGTAGTAGTTCGAGTAGTGACAAAGGTAGTTCGATGTCAAGTGAGAGACACATTGCAAAAGTAGTGCCAAAGTGTGGTAACAAAATCACTGAGATAGACCTGCCTAGTGTAGATGGAAATAGCTCCAGTAATGTTAGCACAAAAACAGATGAGCAGGAGGTTATGAAGCAAACTCACAATGAACACCATTCTAATGTTGTATCTAAGCAACCAAAAACAATTAAGAATGTAATGATGGCATTAAGAGATGAAAAAGTTAGAGAGACAAGTTCTCCAATGAGAGGCAATCGCATAAAGGCTGGTGGTGTATCAACACAGAAAATAAATACAGAGACATCATCCAAACTGCCAAAACCTAATCCTTGTGTTTCTGGTTTGAAGCCTAATTTAGAGGTGCCAACTATTGCGCCTTCAAAAGCAACCCCTGATTCTGCAAAACAAATGCAGGGATCACATACTTTAAAGCATCAGTTACCGATGATAGAATCCACACCAAAAACTAAACCTCGACACAATGTGATTTTAGCATCTGGTCCTATCAAACAAGTAGGAGGAGGTGGAGCTCCTGCCAAGCCAAAGCAAAAGACTCCTCCAAGCTTACTTAAACCACCTTCGTTTCCAAGACGTATGAGGCAGGCAGGGCTTGATGTTCCAAATGCAGAAAATGATACAGTAAAGTTAAGTCCAAATAAAATTGCCCAGGAGCCTAAGATGAGCCACCATCAGTTGACCAATGGTCATCTAACACATGTTTCTAGAGAGATTGCTAGAGAGCCTTTGAAGGCTTTTGAAAGTAGTTCCAAAGGAATTCAAACAGACAGCAGCAATTCTATCTCATCTTCAGTCTCTATTCAAGGATTCGAACTTTCTGACTTTGCAACCACTTTTATTGACTTGAGTGATCCAATACTTCCTGATCATGAGAGTTTAAACCATACTGAAAATGTGGAATCGCGTCCAGACAGCAGTTCTGAAAAATTGTCCGGGGAAACCTCTCTTGTTACACCAAATTTTCAGAATACAATTACTAGTAATGAGAAAGCAAGTCCTGGTTTAACTCTGGATCACTTAGTTCAGGATTCTAAGGTAATGTTTGCTTCTGATGATAGTTCTCTCACAAATCAAACAACTACATCTGTTGCCTCTGGGTGTGATAATATATCTGTAGATCCCTCTTCCGTAATCACACAAGAAATCAAAAACCTTCAAGATATTTCTAAGGAAATGACTTCAACCAAGTCTCTCAAACATCCTCTCCCCATTTCTGGAGAAAAATCTGTTTGTGAAGTGAATCCAGTAAGCCAGTCAAATAATAGGCCTGAAAAAGTTAGCCAGCCAAAACATATATGCATCTCCCCTGGTGATGACAAATTCATGGTAAGGGAAAGACCTGCCGCTGAAACTGCCCCTCTGATTATCTCTACAAAAATTTCAAGCCAGAAAGTTCTACAAGAAGAGAGAGGAACAGTTTTACAGAATCCAGCACCAGAAAGGCCAGCTTCTGGTCACCTTCCTCCAGCTTTTGATGATGTCATTCATGTTATACGCCATAGTAGTTATCGTGTGGGGAGTGAACTGCCAGTGAAGGAATCTGTGGAGATGGGAGTTCAAAACGTAGATGTCGGTAAATTTATCACCATTGCCAAGGATGATTTAGAAATGAAAAATGTGAGCACCCTTAAATCTTCAAATTGTTATGAAGCTACTGGCTTGAAGTCAAATATTTCTGATAAATTGGAAATTAGAAACTTGAGCACTCCTCCTAACTCAAAACCTTCCAGTTGCTCTGACTCTTTGAGCTTGAAATCAAGTATTCCTGACCATCCTGGTGTTAAGGAACAAGATGTGAAAAACCCTGATTCTCTAGTTTCAAAATCTGATTCCACTGACGATACCAAACATAACCCTCCTACAGCCAAAGAAGGAACACCAGCAAAGGAAACTTTGGATGTTAAATCTTCCAGGCAGAGAGCTGAGGCACTTGAAGGGCTGTTAGAATTGTCTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTGCAGTTGTTTTGAAGCCATTTGGAAAAGATCAGGTCTCCCCAAGGGAGACAGCCATTTGGTTAGCCAAGAGTCTAAAAGGATTGATGATTGAGGAAAGCGGGGGACGCTGTTAA 3054 0.4136 MGSRMDQYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAALMKKSNGVYFPEEKLCKWFTQILLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEILKHPYLQPYVHQYCSSFCPPAACSPEKPISAVHDPQKNMAESQNSSSSSSDKGSSMSSERHIAKVVPKCGNKITEIDLPSVDGNSSSNVSTKTDEQEVMKQTHNEHHSNVVSKQPKTIKNVMMALRDEKVRETSSPMRGNRIKAGGVSTQKINTETSSKLPKPNPCVSGLKPNLEVPTIAPSKATPDSAKQMQGSHTLKHQLPMIESTPKTKPRHNVILASGPIKQVGGGGAPAKPKQKTPPSLLKPPSFPRRMRQAGLDVPNAENDTVKLSPNKIAQEPKMSHHQLTNGHLTHVSREIAREPLKAFESSSKGIQTDSSNSISSSVSIQGFELSDFATTFIDLSDPILPDHESLNHTENVESRPDSSSEKLSGETSLVTPNFQNTITSNEKASPGLTLDHLVQDSKVMFASDDSSLTNQTTTSVASGCDNISVDPSSVITQEIKNLQDISKEMTSTKSLKHPLPISGEKSVCEVNPVSQSNNRPEKVSQPKHICISPGDDKFMVRERPAAETAPLIISTKISSQKVLQEERGTVLQNPAPERPASGHLPPAFDDVIHVIRHSSYRVGSELPVKESVEMGVQNVDVGKFITIAKDDLEMKNVSTLKSSNCYEATGLKSNISDKLEIRNLSTPPNSKPSSCSDSLSLKSSIPDHPGVKEQDVKNPDSLVSKSDSTDDTKHNPPTAKEGTPAKETLDVKSSRQRAEALEGLLELSADLLQQNRLEELAVVLKPFGKDQVSPRETAIWLAKSLKGLMIEESGGRC. 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05301 1017 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05301 1017 SUPERFAMILY Protein kinase-like (PK-like) 4 314 IPR011009 -
Seca4g05301 1017 MobiDBLite consensus disorder prediction 908 937 - -
Seca4g05301 1017 MobiDBLite consensus disorder prediction 882 954 - -
Seca4g05301 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Seca4g05301 1017 MobiDBLite consensus disorder prediction 608 634 - -
Seca4g05301 1017 MobiDBLite consensus disorder prediction 608 624 - -
Seca4g05301 1017 MobiDBLite consensus disorder prediction 292 312 - -
Seca4g05301 1017 MobiDBLite consensus disorder prediction 882 903 - -
Seca4g05301 1017 MobiDBLite consensus disorder prediction 407 450 - -
Seca4g05301 1017 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05301 1017 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05301 1017 MobiDBLite consensus disorder prediction 478 506 - -
Seca4g05301 1017 CDD STKc_Nek 7 262 - -
Seca4g05301 1017 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Seca4g05301 1017 MobiDBLite consensus disorder prediction 285 316 - -
Seca4g05301 1017 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Seca4g05301 1017 Gene3D Transferase(Phosphotransferase) domain 1 90 330 - -
Seca4g05301 1017 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 966 - -
Seca4g05301 1017 FunFam Serine/threonine-protein kinase Nek5 90 335 - -
Seca4g05301 1017 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05301 Seca-Chr4 99333779 99340535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05301 14 263 MAP Kinase Kinase Kinase AT1G53570 32.157 1.51e-36 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Seca4g05301 Pkinase 4.1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05301 K08857 - gmx:100818943 1545.41