Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05296 ATGAAGCGCCAACTTCCTTTCTCTTCCATGAGGCCTCCCTTTCCACCTAACGGAGAGTATCATCGCTTTTCCCCCGACCACCGCCCACCTCCTCAAAACGACGCCGAAGCCATTGTCGTCAAGTTCCCTCAATTAAAGCGAAAGAGTGACACTGCTGATTTTGAAGCTGATTCCGGTGATAGGATGACTCTTGCATCCACTGAAGCAGCTAATAGTCCTTTTCAGACACCTATATCAGGAAAGACAAGGAAATCAAGCAAAGCCTCTAGACTTACAAAATGCAACAGATTTGAACCAAAAACCCCAGGCTCAAACATAGGTTCTTCTTCAGGCAATAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCGGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGACACATTAGAGGTACAAAAGAGGAGAATATATGATATAACGAATGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAGCTTAAAAACAGAATTCAATGGAAGGGCCTGGATGTTTCAAGACCAGGGGAGGCTGATGTTAGTTTTGCCAGTTTACAGGCAAGGAATTATTCTATTTGCAGTTAA 636 0.4277 MKRQLPFSSMRPPFPPNGEYHRFSPDHRPPPQNDAEAIVVKFPQLKRKSDTADFEADSGDRMTLASTEAANSPFQTPISGKTRKSSKASRLTKCNRFEPKTPGSNIGSSSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADVSFASLQARNYSICS. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05296 211 SMART E2F_TDP_2 121 186 IPR003316 GO:0005667|GO:0006355
Seca4g05296 211 PANTHER TRANSCRIPTION FACTOR E2F 64 203 IPR015633 GO:0000978|GO:0006357
Seca4g05296 211 Coils Coil 137 157 - -
Seca4g05296 211 MobiDBLite consensus disorder prediction 1 33 - -
Seca4g05296 211 MobiDBLite consensus disorder prediction 98 115 - -
Seca4g05296 211 Pfam E2F/DP family winged-helix DNA-binding domain 123 186 IPR003316 GO:0005667|GO:0006355
Seca4g05296 211 SUPERFAMILY "Winged helix" DNA-binding domain 121 184 IPR036390 -
Seca4g05296 211 MobiDBLite consensus disorder prediction 72 115 - -
Seca4g05296 211 Gene3D - 115 188 IPR036388 -
Seca4g05296 211 FunFam E2F transcription factor 1 115 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05296 Seca-Chr4 99139340 99142665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05296 2 203 E2F-DP Transcription Factor Family AT5G22220 59.809 7.73e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Seca4g05296 E2F_TDP 3.3e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05296 K06620 - gmx:100819817 322.013