LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g05294	ATGTCTTCCAACAAGAGAAAGCTCATGAGAGCCTTACACGGAGGAGGCTGTGGTTGCAACAAACCAAAGCCCTCTGACATATACGACCCAACCCCAAAACCAAAACCCAAAATCTCAATTTACCAAAACACAAACCCTAACTGCCTCACTCCCTCCACCACAACCACCACAACTTCCGGTGACCGCATCGTTGACGAGGAAGACTTCACTTCCACCACCGTCTCCGAAACCGAAACTCACCATCAAGACCATAACAACACCACCATCACCAACAGTATACCCAAACCAAGCACAAAACTCAGTGATAGCATCGCCGTTGAGAAGGACTCGAAGGATCCACATAAAGATTTCCGGAATTCGATGCTCCAAATGATATTTGAGAGAGAGATCTACACAGAACCCGATCTTCAAGAGCTTCTGGAATGCTTTCTTCAGCTGAATGCGCCGTGTCACCACCAAGTCATCGTTCAAGCCTTCATTGACATCTGTGAAGAAACATTCCCTAAGAAATTTGATGGTGGTGGTGGTGAACCGTCTCGGAGGAAGGAGATCACTCGAAAGGGACGTCGGTGA	573	0.4764	MSSNKRKLMRALHGGGCGCNKPKPSDIYDPTPKPKPKISIYQNTNPNCLTPSTTTTTTSGDRIVDEEDFTSTTVSETETHHQDHNNTTITNSIPKPSTKLSDSIAVEKDSKDPHKDFRNSMLQMIFEREIYTEPDLQELLECFLQLNAPCHHQVIVQAFIDICEETFPKKFDGGGGEPSRRKEITRKGRR.	191

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g05294	190	Pfam	Transcriptional repressor, ovate	110	165	IPR006458	-
	Seca4g05294	190	MobiDBLite	consensus disorder prediction	170	190	-	-
	Seca4g05294	190	NCBIfam	uncharacterized plant-specific domain TIGR01568	104	163	IPR006458	-
	Seca4g05294	190	ProSiteProfiles	OVATE domain profile.	106	165	IPR006458	-
	Seca4g05294	190	PANTHER	TRANSCRIPTION REPRESSOR OFP7-RELATED	54	166	IPR038933	GO:0045892
	Seca4g05294	190	MobiDBLite	consensus disorder prediction	37	60	-	-
	Seca4g05294	190	MobiDBLite	consensus disorder prediction	84	99	-	-
	Seca4g05294	190	MobiDBLite	consensus disorder prediction	61	83	-	-
	Seca4g05294	190	MobiDBLite	consensus disorder prediction	1	115	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g05294	Seca-Chr4	99117904	99118476	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	OFP	Seca4g05294		Ovate	4.2e-23	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g05294	-		-	gmx:102670259	227.254