Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05276 ATGGACCTTAGAGGATATCCCCAATTAATTATTGAATTCATGGGGTCTGACATAAGCATTAGACCAGGATCATGGAATGGCCAGGCTGTGACTGGAAATCCACGTCCAACGCCTCGATTGTCACAAACATTTGTGTTCAATGAAAAAGAAGTGTATTATGAGTTCGAGCTTCTTGTGGGATCGACTTTCAGCGTATATACACTATCCCCATCAGGCACTGGACAGATTTATTTGTGGACAACTCAGAAAGGCAGCAGGGAAGTCCTCTCAGTTGTGGATCAAATTCAGTGTGACAATTATGCCATTTGCGGTGCAAATTCTATATGCAATGTTGATGGTTACCATCTAACTTGTGAATGCCTGAAAGGATATGTTCCCAAGTTTCCTCAACAATGGAATTTATCAATTTGGACCAATGGTTGTGTTCCAAGGAATGAATCTAATTGCACAAGTAGTCACACAGATGGCTTCTGGAAGTACACACAAATGAAATTGCCAGACACGTCTTCGTCATGGTATAATAAGACCATGAGCCTCGAGGAATGTCAGAAATCATGTCTGAAAAACTGTTCATGTGTAGCATATGCAAATTTAGATACTCGTAATGGAGGAAGTGGTTGTCTACTCTGGTTTAACAATGTGCTTGACGTGAAGAAATTCTCTCAATGGGGACAAGATCTCTATGTCAGAGTCCCTGCATCAGAACTAGATCATGTTGCAGCAATTGACCATGGAAATAGGAAGAAAGAGATGGTAGGAATTACAGTTGGTATGATTATTTTCAGATTAATTACATGTGCATCCATATTGATGATTAAGAATCCAGACCAATCAGGGATTGCAAGAAAAATTTACAACAACCATTACAAAAATAAACTGAGGAAGGAAGACGTTGATCTTCCAACATTCGATTTATCAATCTTAATTAATGCTACTGAAAACTTTTCAAGTAGTAACAAACTTGGAGAAGGTTGCTTTGGACCAGTATACAAGGGCACACTAATAGATGGGCAAGAGTTAGCTGTGAAAAGGCTTTCCAAAAAGTCTAGACAACGGTTTGAGGAGTTTAAAAAAAAGGTAGCATTGATTGCCAAACTTCAACACCGTAATCTTATAAAGCTTCTTGGTTGTTGCATTCAAGGAGAAGAGAAAATGTTGATCTATGAATACATGCCCAACAAAAGCTTGGAATACTTTATTTTTCATGAATCCAAAAGGATTATGCTTGATTGGTTTAAGCGTTTTAACATTATCAACAACATTGCCCAAGGACTTCTTTATCTTCATCGAGACTCTAGGTTGAGAGTTATTCATAGAGACCTAAAAACCAACAATATTTTACTAGATGCAAATTTGGATCCAAAAATATCAGACTTTGGCTTAGCTCGAATAGTTTTGGGAGATGAGGTTGAAGCAAACACAAAAAGAGTGGTTGGAACATATGGTTACATTCCCCCTGAGTATGCTATGCGAGGGCGTTTCTCAGTAAAATTTTATGTCTTTAGCTATGGTGTGATAGTACTAGATATTGTAAATGGGAGGAAGAACACAAAATTTTTAGACCCAGAACACAATCATAATCTACTTGGACATGCATGGAGGTTATGGACTGAAGAAAGGGCACTGGAATGA 1632 0.3811 MDLRGYPQLIIEFMGSDISIRPGSWNGQAVTGNPRPTPRLSQTFVFNEKEVYYEFELLVGSTFSVYTLSPSGTGQIYLWTTQKGSREVLSVVDQIQCDNYAICGANSICNVDGYHLTCECLKGYVPKFPQQWNLSIWTNGCVPRNESNCTSSHTDGFWKYTQMKLPDTSSSWYNKTMSLEECQKSCLKNCSCVAYANLDTRNGGSGCLLWFNNVLDVKKFSQWGQDLYVRVPASELDHVAAIDHGNRKKEMVGITVGMIIFRLITCASILMIKNPDQSGIARKIYNNHYKNKLRKEDVDLPTFDLSILINATENFSSSNKLGEGCFGPVYKGTLIDGQELAVKRLSKKSRQRFEEFKKKVALIAKLQHRNLIKLLGCCIQGEEKMLIYEYMPNKSLEYFIFHESKRIMLDWFKRFNIINNIAQGLLYLHRDSRLRVIHRDLKTNNILLDANLDPKISDFGLARIVLGDEVEANTKRVVGTYGYIPPEYAMRGRFSVKFYVFSYGVIVLDIVNGRKNTKFLDPEHNHNLLGHAWRLWTEERALE. 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05276 543 ProSiteProfiles EGF-like domain profile. 93 130 IPR000742 -
Seca4g05276 543 Gene3D Hepatocyte Growth Factor 147 228 - -
Seca4g05276 543 Pfam S-locus glycoprotein domain 21 128 IPR000858 GO:0048544
Seca4g05276 543 Pfam PAN-like domain 149 217 IPR003609 -
Seca4g05276 543 CDD PAN_AP_plant 147 232 - -
Seca4g05276 543 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 391 482 - -
Seca4g05276 543 ProSiteProfiles PAN/Apple domain profile. 149 232 IPR003609 -
Seca4g05276 543 SMART serkin_6 315 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05276 543 ProSiteProfiles Protein kinase domain profile. 315 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05276 543 SMART ntp_6 152 231 IPR003609 -
Seca4g05276 543 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 280 390 - -
Seca4g05276 543 Pfam Protein tyrosine and serine/threonine kinase 318 526 IPR001245 GO:0004672|GO:0006468
Seca4g05276 543 Gene3D Phosphorylase Kinase; domain 1 277 390 - -
Seca4g05276 543 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 7 517 - -
Seca4g05276 543 SUPERFAMILY Protein kinase-like (PK-like) 301 535 IPR011009 -
Seca4g05276 543 Gene3D Transferase(Phosphotransferase) domain 1 391 543 - -
Seca4g05276 543 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 148 231 - -
Seca4g05276 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05276 Seca-Chr4 98694190 98699744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05276 303 543 Receptor kinase-like Gene Family AT4G23140 57.085 1.49e-96 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05276 PK_Tyr_Ser-Thr 2.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05276 - - gmx:100815430 801.971