Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05273 ATGTCAAAAACTTCCACTTCACTAGACACTTTATCAGTGAATGAATCTATCCAAGATGGGGAGACTTTAGTTTCAGCAGGTGGAATTACTGAAGTGGGTTTCTTTAGCCCAGGAAATACAACACGTCGATACTTGGCTGTATGGTTCAGGAATGTATCCCCAACAACAGTGATATGGGTGGCCAACCGAGAAACACCTCTCCACAATAACTCAGGATTTTTAAAACTCAATGAAGAAGGGATTCTTCAACTTCTCAATGGCACAAACAGCATTATTTGGTCATCCAATATATCAAGCAAGGCAGGGAGTAATCCAATTGCTCAGATCTTGGATTCAGGAAACTTTGTAGTGAAAAATGGACAGGAAACTAACAAGGACAACTTTTTTTGGCAGAGTTTTGATTATCCTTGCGATACATTGTTGCCAGGAATGAAGCTTGGATGGAACTTGCAAACTGGTCAAGAAAGATTTCTGTCATCTTGGAAAAGTGCTGATGATCCTGCCAAGGGAGAATATACTTTGAGAATTGACCTTAGAGGATATCCCCAATTAATTAAATTCAGGGAAACTGATATACATGTTAGAGCAGGGTCATGGAATGGCCAGTCTATGACTGAATATCCACTTCCAACTCCTGGAGTTTTACAAACATTTGTGTTCAATGAAAAAGAAGTGTATTATGAGTTCGAGATTCTTTACAAATCGACCTTCAGCACATATACACTTACCGTACCAGGTGCCGGGCAGAGTTATTTCTGGACAACTGAACAAGACATCAGGGAAGCCACCTCAATTGTGGAGGAGGATCAGTGCGAAAATTATGCCACTTGTGGTTCAAATTCTGTATGCAATATTGATGGGAACCATCTAACTTGTGAATGCCTGAAAGGATATGTCCCCAAGTTTATTGAACAATGGAATGTATCAGTTTGGTCTAACGGTTGTGTTCCAAGGAATAAATCTACTTGTGGAAACAGGTACGCAGATGGCTTCTTGAAGTACAGAGGAATGAAATTGCCAGACACGTCTTCGTCATGGTTTAATAAGACCATGAACCTTGAGGAATGTCAGAAATCATGTCTGAAAAACTGTTCATGTGTAGCATATGCAAATTTAGATATCCGTAATGGAGGAAGTGGTTGTCTACTCTGGTTTAACAATCTGGTTGACGTGAGGAAATTCTCTCAATGGGGACAAGATCTTTATGTCAGAGTCCCTGCTTCAGAACTAGATTCAAACATGACAATTACATTTGGTAAGCATGAAAATAGGAAGAGTAGTATACTTCCAACTGTCATACCGATCTCATTATTTCTAATACTGCTTATACCTGGTCTATTCGTTTACTGGACTAGAAGGCAGAGGAAAGGGGAAGATTTGCTACATTTTGATGTAGGCATGAGCATGAAAGTTAAAGACACAGAGTTTACTGAAATAGATAAGGGTTCGAAAGTTAAGAAGAAGGAAGTCAAATTGCCATTATTCAGTTTTGGGAGCGTTTCAGCTGCAACTAATAACTTTTCAGATGCAAATAAACTTGGTGAGGGTGGCTTTGGACCTGTTTACAAGGGTAAATTATTGAATGGGGATGAGGTTGCTGTAAAAAGACTATCCCGGAGATCTGGTCAAGGATGGGAGGAGTTGAGAAATGAAGCCTTGTTGATTGCAAAACTCCAACATAATAATCTTGTTAGACTTTTAGGTTGCTGCATTGATCGAAATGAAAAGATGCTGATTTATGAATATATGCCTCATAAAAGCTTGGATGGTTTTCTTTTTGATGCAACAAAAAGAAGGATGCTAGATTGGGGAACACGAGTTCGAATAATTGATGGCATTGCCCAAGGACTCCTTTATCTTCATCAGTATTCAAGGTTCCGGATCATTCATAGAGATTTAAAAGCTAGCAACATATTGTTAGACATCAACATGAATCCTAAAATATCAGATTTTGGAATGGCGAGAATGTTTGGTGAAAATGAACTTCAAGCAAATACAAACCGGATAGTTGGAACTCATGGCTACATGTCCCCTGAATATGCTCTAGAAGGTCTTTTCTCAATAAAATCTGACGTGTTTAGCTTTGGGGTCCTGTTGTTAGAGATTTTGAGTGGCAAGAAGAATACCGTTTTTATCAAACAAACTCCCTCAATCTCCTTGCTTATCCATCTCAAAAACATGCATTATTTAGACACTGCTTGGGATCTATGGACAAGTAATTCGGCAATGGACCTTATAGATCCAACATTGGAAGATATCTCCAATAAGCATGTAGTGCCAAGATATGTGAACATAGGACTTCTTTGTGTCCAAGATAGTCCAACAGATAGGCCAACCATGTCTGATGTTGTATCAATGATTGGCAATGACACTGCGGCCCTTCCTCGTCCAATGCCACCTGCATTTCTAAATGTGAGAGGTAATGATAATTCAAGATTGGCCAGAAGTGAAGAAGAAAACCTTTCTGTGAATATTATCACAGATTCACTTGTGGAACCAAGATGA 2505 0.3916 MSKTSTSLDTLSVNESIQDGETLVSAGGITEVGFFSPGNTTRRYLAVWFRNVSPTTVIWVANRETPLHNNSGFLKLNEEGILQLLNGTNSIIWSSNISSKAGSNPIAQILDSGNFVVKNGQETNKDNFFWQSFDYPCDTLLPGMKLGWNLQTGQERFLSSWKSADDPAKGEYTLRIDLRGYPQLIKFRETDIHVRAGSWNGQSMTEYPLPTPGVLQTFVFNEKEVYYEFEILYKSTFSTYTLTVPGAGQSYFWTTEQDIREATSIVEEDQCENYATCGSNSVCNIDGNHLTCECLKGYVPKFIEQWNVSVWSNGCVPRNKSTCGNRYADGFLKYRGMKLPDTSSSWFNKTMNLEECQKSCLKNCSCVAYANLDIRNGGSGCLLWFNNLVDVRKFSQWGQDLYVRVPASELDSNMTITFGKHENRKSSILPTVIPISLFLILLIPGLFVYWTRRQRKGEDLLHFDVGMSMKVKDTEFTEIDKGSKVKKKEVKLPLFSFGSVSAATNNFSDANKLGEGGFGPVYKGKLLNGDEVAVKRLSRRSGQGWEELRNEALLIAKLQHNNLVRLLGCCIDRNEKMLIYEYMPHKSLDGFLFDATKRRMLDWGTRVRIIDGIAQGLLYLHQYSRFRIIHRDLKASNILLDINMNPKISDFGMARMFGENELQANTNRIVGTHGYMSPEYALEGLFSIKSDVFSFGVLLLEILSGKKNTVFIKQTPSISLLIHLKNMHYLDTAWDLWTSNSAMDLIDPTLEDISNKHVVPRYVNIGLLCVQDSPTDRPTMSDVVSMIGNDTAALPRPMPPAFLNVRGNDNSRLARSEEENLSVNIITDSLVEPR. 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05273 834 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 778 - -
Seca4g05273 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 3 133 - -
Seca4g05273 834 Pfam Protein tyrosine and serine/threonine kinase 511 786 IPR001245 GO:0004672|GO:0006468
Seca4g05273 834 ProSiteProfiles Protein kinase domain profile. 507 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05273 834 SUPERFAMILY Protein kinase-like (PK-like) 491 810 IPR011009 -
Seca4g05273 834 ProSiteProfiles PAN/Apple domain profile. 323 406 IPR003609 -
Seca4g05273 834 Gene3D - 2 133 IPR036426 -
Seca4g05273 834 CDD PAN_AP_plant 320 406 - -
Seca4g05273 834 Gene3D Hepatocyte Growth Factor 323 402 - -
Seca4g05273 834 Pfam D-mannose binding lectin 56 162 IPR001480 -
Seca4g05273 834 SUPERFAMILY alpha-D-mannose-specific plant lectins 57 167 IPR036426 -
Seca4g05273 834 Pfam S-locus glycoprotein domain 195 302 IPR000858 GO:0048544
Seca4g05273 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Seca4g05273 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 583 795 - -
Seca4g05273 834 CDD STKc_IRAK 513 787 - -
Seca4g05273 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 322 405 - -
Seca4g05273 834 Gene3D Phosphorylase Kinase; domain 1 481 582 - -
Seca4g05273 834 Gene3D Transferase(Phosphotransferase) domain 1 583 793 - -
Seca4g05273 834 PIRSF SRK 1 834 IPR024171 GO:0004674
Seca4g05273 834 CDD B_lectin 14 136 IPR001480 -
Seca4g05273 834 ProSiteProfiles Bulb-type lectin domain profile. 8 130 IPR001480 -
Seca4g05273 834 SMART ntp_6 326 405 IPR003609 -
Seca4g05273 834 Pfam PAN-like domain 326 391 IPR003609 -
Seca4g05273 834 SMART blect_4 14 136 IPR001480 -
Seca4g05273 834 FunFam Uncharacterized protein 483 582 - -
Seca4g05273 834 SMART serkin_6 507 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05273 Seca-Chr4 98670825 98677562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05273 419 802 Receptor kinase-like Gene Family AT4G23230 48.438 3.40e-116 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05273 PK_Tyr_Ser-Thr 4.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05273 - - gmx:100815430 951.429