Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05269 ATGGCACTGACTTCATCTACCCTTGCTCCCTTGCCAATATTAGTGTATGGGCTAAGCTTATTTTGTGTGAATGCAACTACCATAACAAAATTCCTACAAATGGGGCAATCACTGGGAATCTCAGACACCATGGTTTCTGCCAGTGGGAACATCGAACTGGGCTTTTTCAATAGAACCAGAGAGAATTCCACCAAGTACTACGTAGGTATATGGTTTAAAAATGTTCCAAACGACAAGATTATGTGGGTTGCTAACAGAGATTACGCATTTGAAACCTCCTCAGCCGTTCTCACCATTCAATCTGATGGAAACATTGTCATCATAGATGGACCACTGACTTACAGCGTGAGCAGTGTTCCAAACAACTCTAGCACCCACGCTTTGCTCTTGGATTCAGGAAATTTGATACTGTTGAACTACTCGAACGACTTGATTTTGTGGCAGAGTTTTGATAATCCCACGGATACACTTGTGCAGGGAATGCTCGTAGGACAGGAGTTCATTTTGAAATCATGGAAAAGTGCAGAGGACCCTGCTCCAGGAGCATTTTCACTCGTATATGATTTTCACAATGCGAGTCTAATAGTCCACAAGGGTTCTAATGTATTCTTCGTTGATAACAATTCGGATCGGAATCGGAATCGGAACAAGGACTTTATCATTTGGCCAGGTGATAGCAATTCTCGAGTGGTATTAGAAGTGTCTGGGGATCTTAACTACCAGAAATGGTCAGAGAAAGCTAAGCGTTGGGTTTCTCTACAGTCATCCAAGTGCGGAACGAACAATTCGTGTGGAGATTTTTCCATTTGTAATCCGCAGCTAGAAGCTCTTGAACCTTGTCACTGTCTTGACGGTTTTGAACCGTTGGATGCTGATTCTTGGAGGCAGAGGAACAGATCCGGTGGATGTGTCAGGAGAAAGGAGTTGTCCTGCAGTAAAACAAATGTTTTGTCTATGGTGGAGTTACCTTCAACTTCAAGTGAAGTTATGCTAAAGATGGATACAGCAGCGAGATGTGAACGCACTTGCTTTAACGATTGTTCTTGTGTTGCTTATGCTTATGATTTTAACAGTTACTGTTGGTTATGGCATGACCACTTATTTGGTCTGAAGAATGTCTCAGGTGATGTCGAAAATGTTAATAATACATGGTTTTATCTCAGACTTGCTGCCTCTGAGATTGATTCAAACATAAGGAATGCACTTGGCAGGCATGAAAACAGGAAGAGGAGTCTACTTCTATTTGTCATACCAATCGCATTTCTAATATTGCATATACTGGGCCTATTTGTTTACTGGACTAAAAGGCAGAGGAAAGTAGGGGAAGATTTGCTACATTTTGATGTACGCATGGGCATGAATGTTAAAGACACAGAGTTTACTGAAAGAGATAAGGGCTTAAAAGTTAAGAAAAAGGAAGTTAAATTACCATTATTCAGTTTTGGGAGCGTTTCAGCTGCAACTAATAACTTTTCAGATGCAAATAAACTTGGTGAGGGTGGCTTTGGACCTGTTTACAAGGCATGTTCCATAGGTAAATTATTGAATGGGGATGAGGTTGCTGTAAAAAGGCTATCCCGAAGATCTGGTCAAGGATGGGAGGAGTTGAGAAATGAAGCCTTGTTGATTGCAAAACTCCAACACAATAACCTTGTTAGACTTTTGGATGCAACAAAAAGAAGGATGCTAGATTGGGAAAACACGGGTTCGAATAATTGA 1719 0.4113 MALTSSTLAPLPILVYGLSLFCVNATTITKFLQMGQSLGISDTMVSASGNIELGFFNRTRENSTKYYVGIWFKNVPNDKIMWVANRDYAFETSSAVLTIQSDGNIVIIDGPLTYSVSSVPNNSSTHALLLDSGNLILLNYSNDLILWQSFDNPTDTLVQGMLVGQEFILKSWKSAEDPAPGAFSLVYDFHNASLIVHKGSNVFFVDNNSDRNRNRNKDFIIWPGDSNSRVVLEVSGDLNYQKWSEKAKRWVSLQSSKCGTNNSCGDFSICNPQLEALEPCHCLDGFEPLDADSWRQRNRSGGCVRRKELSCSKTNVLSMVELPSTSSEVMLKMDTAARCERTCFNDCSCVAYAYDFNSYCWLWHDHLFGLKNVSGDVENVNNTWFYLRLAASEIDSNIRNALGRHENRKRSLLLFVIPIAFLILHILGLFVYWTKRQRKVGEDLLHFDVRMGMNVKDTEFTERDKGLKVKKKEVKLPLFSFGSVSAATNNFSDANKLGEGGFGPVYKACSIGKLLNGDEVAVKRLSRRSGQGWEELRNEALLIAKLQHNNLVRLLDATKRRMLDWENTGSNN. 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05269 572 Pfam Protein tyrosine and serine/threonine kinase 495 559 IPR001245 GO:0004672|GO:0006468
Seca4g05269 572 ProSiteProfiles PAN/Apple domain profile. 311 390 IPR003609 -
Seca4g05269 572 Pfam PAN-like domain 316 368 IPR003609 -
Seca4g05269 572 SMART blect_4 29 153 IPR001480 -
Seca4g05269 572 ProSiteProfiles Bulb-type lectin domain profile. 29 150 IPR001480 -
Seca4g05269 572 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 558 - -
Seca4g05269 572 SUPERFAMILY Protein kinase-like (PK-like) 473 558 IPR011009 -
Seca4g05269 572 Gene3D Phosphorylase Kinase; domain 1 452 561 - -
Seca4g05269 572 Pfam S-locus glycoprotein domain 218 288 IPR000858 GO:0048544
Seca4g05269 572 Pfam D-mannose binding lectin 80 166 IPR001480 -
Seca4g05269 572 Gene3D - 24 150 IPR036426 -
Seca4g05269 572 CDD B_lectin 36 153 IPR001480 -
Seca4g05269 572 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 176 IPR036426 -
Seca4g05269 572 CDD PAN_AP_plant 309 390 - -
Seca4g05269 572 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 150 - -
Seca4g05269 572 ProSiteProfiles Protein kinase domain profile. 491 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05269 Seca-Chr4 98655175 98657512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05269 419 555 Receptor kinase-like Gene Family AT4G23190 47.445 3.95e-24 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05269 PK_Tyr_Ser-Thr 2.3e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05269 - - gmx:100811148 639.417