Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05266 ATGAGAACCACCACTTCACTAGACAGTATAGTTCCAGGTCAATCCATCCGATATAATGAGACATTAGTTTCAGCCTCCGCAAATTTTGAACTGGGGTTTTTGAGCCCTGGAGCTTCTAGTACTCTATGTGTTGGAATATGGTACAAGGATTCTCCTTCAACAGTGGTATGGGTGGCCAATAGAGAAGCACCACTCAACAATACCTCTGGAGTTTTACAAATCAATAATCAAGGAGTTCTTGTCCTTCTTAATAGCACAAAGAGCACTGTATGGTCATCCAACACATCAGGCAAGGCAGAGAATCCAATTGCACAGCTCTTGGACTCAGGAAACTTTGTTGTGAGAAATGTACATGGCAATAACCTGGGAAATATATTATGGCAGAGCTTTGATTATCCATGTGATACTTTACTACCTGAAATAAAACTTGGATGGGACTTAGAAACTGGTTTAGACAGGTTTTTGTCATCTTGGAAAACTGCAGATGATCCTGGTCAGGGTAACAATATAGTTAGAATGGACATTCAAGGCTATCCACAAGCTGTTCAATTAAAAGGGAATGTTATAAAGGCAAGAACAGGACATTGGAATGGCCTTACTTTTGCAGGATATCCAGCTCAAAAGCCTAATCCAATATATAGAAATGAATTTGTTTTGAATGAGAAAGAAGTATATTATGAGTATGAACTTCTGAATAGATCAGTTTTCTCAAGATATGTCATCTCCACTTCAGGTGTTGGGCAGCGTTTTGTATGGACAAGTCAAACAAGTAGCTGGAAGGTAATCTCAACTGCCATAGCAGATCAGTGTGAAAATTATGCTTTGTGTGGTGGTTTTTCCATCTGCAACATCACTAGCACTCCTGTCTGTGGATGCCTGAAAGGGTTTGTACCAAAACATCCAGAAGAATGGAATATGTCATATTGGTCTAATGGCTGCATTCGCAGCATTTCATTTGATTCATATGCAAATTTGGATATACGGGATGGAGGAAGTGGCTGCTTACTTTGGTTTGATGATCTGGTTGACATGAGGGTATTCTCTCAAGGAGGACAAGACCTTTATATAAGAGTTCCTGCTTCAGAGATAGATCCTGCTGCAAACCATGACCATAGGAAGTTCACCAAGAAGAAGCTAGTAGGAATAGTAGTTGGGTCCACAGCATTAGTCATCGGCTTGATAATTCTTGGTTGTACAACATCTATATTGAAAAAGAAACTTGGAATTTCAGTGGCAGAAAGAATGTTTTACTGGAAGCAATACAAAAGTAAACAAAGGAAGGAAGACATGGATCTGCCAACATTTGATTTGCCAATCATTGCTAAAGCCACTAATAACTTTTCAAGCATAAATGAACTAGGGGAAGGTGGATTTGGACCTGTGTGTAAGGGTACACTGATGGATGGGCAAGAAGTAGCCATTAAAAGACACTCAAAGAAGTCTGATCAAGGATTGGAGGAGTTTAAAAATGAGGTTGCGCTGATTGCCAAACTTCAGCACCGTAATCTTGTGAAGCTTCTTGGTTGCTGCATCCACGGAGAGGAAAAAATGTTGATCTATGAATACATGTCCAACAAGAGCTTGGACTACTTCATCTTTGATGAACCTAGAAGCAAGCAGTTGGATTGGCTTCAGCGTTTCCGCATTATTTGTCGTGTTGCTAGAGGACTTCTCTATCTTCACCAAGACTCTAGGCTGAGAATTATTCACAGAGATTTGAAAACCAGCAATATCCTACTAGATGCTTATATGAATCCAAAAATTTCAGACTTTGGCCTAGCTCGGACCTTTTGGGGAGATCAAATTAAAGCCAACACAAAAAAAGTGGTTGGTACATACGGTTACATACCACCAGAGTATGTTGTGCATGGTCATTACTCAGTAAAATCTGATATCTTTAGTTTTGGAGTAATAGTACTAGAGATAATTAGTGGGAAGAAGAATTGGGGATTTTCTGACCCAGAAAAATGGCTTAATCTTCTTGGACATGCATGGAGACTCTGGACTGAAGATAGACCACTAGAACTGATGAACAAACACTTAGGTGAAAGCTTCAAGTCTTCTGAAGTCATACGATGCATACATGTGGGTTTGTTATGTGTACAACAAAAACCAGAAGACAGACCAGACATATCTTCTGTTGTTCTTATGCTAAATGGTGAGAAATTATTGCCCCAGCCAAAGGCACCAGGATTTTATACAGGAAGTGATTTACCTGAAGCGGAATCTTCTAGTATACACAATCTGTTCACCCCAAATGAGATATCCCTTTCAACTCTTGAAGCAAGATAG 2292 0.397 MRTTTSLDSIVPGQSIRYNETLVSASANFELGFLSPGASSTLCVGIWYKDSPSTVVWVANREAPLNNTSGVLQINNQGVLVLLNSTKSTVWSSNTSGKAENPIAQLLDSGNFVVRNVHGNNLGNILWQSFDYPCDTLLPEIKLGWDLETGLDRFLSSWKTADDPGQGNNIVRMDIQGYPQAVQLKGNVIKARTGHWNGLTFAGYPAQKPNPIYRNEFVLNEKEVYYEYELLNRSVFSRYVISTSGVGQRFVWTSQTSSWKVISTAIADQCENYALCGGFSICNITSTPVCGCLKGFVPKHPEEWNMSYWSNGCIRSISFDSYANLDIRDGGSGCLLWFDDLVDMRVFSQGGQDLYIRVPASEIDPAANHDHRKFTKKKLVGIVVGSTALVIGLIILGCTTSILKKKLGISVAERMFYWKQYKSKQRKEDMDLPTFDLPIIAKATNNFSSINELGEGGFGPVCKGTLMDGQEVAIKRHSKKSDQGLEEFKNEVALIAKLQHRNLVKLLGCCIHGEEKMLIYEYMSNKSLDYFIFDEPRSKQLDWLQRFRIICRVARGLLYLHQDSRLRIIHRDLKTSNILLDAYMNPKISDFGLARTFWGDQIKANTKKVVGTYGYIPPEYVVHGHYSVKSDIFSFGVIVLEIISGKKNWGFSDPEKWLNLLGHAWRLWTEDRPLELMNKHLGESFKSSEVIRCIHVGLLCVQQKPEDRPDISSVVLMLNGEKLLPQPKAPGFYTGSDLPEAESSSIHNLFTPNEISLSTLEAR. 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05266 763 ProSiteProfiles Bulb-type lectin domain profile. 7 127 IPR001480 -
Seca4g05266 763 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 412 522 - -
Seca4g05266 763 Pfam D-mannose binding lectin 54 159 IPR001480 -
Seca4g05266 763 SMART blect_4 13 133 IPR001480 -
Seca4g05266 763 CDD B_lectin 19 133 IPR001480 -
Seca4g05266 763 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 7 708 - -
Seca4g05266 763 ProSiteProfiles Protein kinase domain profile. 447 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05266 763 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 2 130 - -
Seca4g05266 763 SUPERFAMILY alpha-D-mannose-specific plant lectins 55 164 IPR036426 -
Seca4g05266 763 Pfam Protein tyrosine and serine/threonine kinase 450 714 IPR001245 GO:0004672|GO:0006468
Seca4g05266 763 SMART serkin_6 447 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05266 763 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 523 726 - -
Seca4g05266 763 Gene3D Transferase(Phosphotransferase) domain 1 523 725 - -
Seca4g05266 763 Pfam S-locus glycoprotein domain 192 299 IPR000858 GO:0048544
Seca4g05266 763 SUPERFAMILY Protein kinase-like (PK-like) 431 718 IPR011009 -
Seca4g05266 763 PIRSF SRK 319 763 IPR024171 GO:0004674
Seca4g05266 763 PIRSF SRK 1 330 IPR024171 GO:0004674
Seca4g05266 763 Pfam Domain of unknown function (DUF3403) 724 763 IPR021820 GO:0004674
Seca4g05266 763 Gene3D Phosphorylase Kinase; domain 1 420 522 - -
Seca4g05266 763 Pfam PAN-like domain 311 344 IPR003609 -
Seca4g05266 763 CDD STKc_IRAK 453 720 - -
Seca4g05266 763 Gene3D - 3 130 IPR036426 -
Seca4g05266 763 ProSitePatterns Serine/Threonine protein kinases active-site signature. 568 580 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05266 Seca-Chr4 98583172 98586502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05266 360 733 Receptor kinase-like Gene Family AT4G23190 49.869 2.82e-126 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05266 PK_Tyr_Ser-Thr 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05266 - - gmx:100814745 904.049