LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g05264	ATGATCCTGCTATGGGAGGATTTTCTTCAAGACTTGACATTAGAGGATATCCCCAAGTTATTACTTATTACATTCAAGGGGTCTAATAAAAAAATTAGAACAGGGCCATGGAATGGCGAGTCTTTGGTTGGTTATCCAGTTTCAACTCCTAAAATATCACAAAAATTTGTGTTAAATGAAAAAGAAGTGTATTATGAGTACAAGATTCTTGATAGTTCGGTTTTCATTGTATATACACTGACCCCTTCAGGCATTGCAGAGAGTCTGTTTTGGACAAGTGAATCAGGTAACAGGGAAGTCTTCTCAACAGGAGAGGAAGATCAATGTGAGCATTATGCCTTTTGCGGTGCAAATTCTGTTTGCAGTGTTGATGGTTACCATGCAACCTGTGAATGTTTGAAAGGATATGTTCCCAAGTTTCCTGAAATATGGAATATATCATTTTCAAGCGGTTGTGTTCCGAGGAATAAATCTAACTGCAGCGAAAACAGTTACACGGATGGATTCTTGAAGTATACACACATAAAATTGCCAGACACGGTTTCATCATGGTTCAATGAAACCATGAACCTTGAGGAATGTCATAAGTCATGTCTGAAAAACTGTTCTTGTGTAGCATATGCAAATTTAGATATCAGTAACGGTGGAAGTGGGTGTCTAGTTTGGTTTAATAATCTGGTTGACTTGAGGAAATTCTCTAGGTGGGGACAAGATCTTTATGTCAGAGTCCCTGCTTCAGAACTAGATCATGTTGCAGTTAATGGCCACGGAAACAAGATGAAGAAACTGATAGGAATCACAGTTGGCGTGATTATTTTTGGATTCATTACATGTGTCTCCATAATAATATATAGAAAGCGAGTGGCAGCAAGAGTGTATCATCTTGCACCGTTTCAATGGCGGTATGAATATTTTAGACTGAGAAAGGAAGACATGGATCTGCCAATATTTGATTTGTCAATCATTGTTAAAGCCACTGATAATTTTTCTAGCAGAAATAAACTTGGGGAAGGTGGATTTGGACCAGTGTATAAGGGTACACTGGCAGATGGGCAAGAAGTGGCCATAAAAAGGCACTCAAAGATGTCTGATCAAGGAGTTGAGGAGTTTAAAAATGAAGTTCTGTTGATTGCCAAACTCCAGCACCATGAACCTAGAAGCAAGCTCTTGGATTGGCCTCAGCGTTTCCACATTATTGGTGGTGTTGCTAGAGGGCTTCTTTATCTTCACCAAGACTCTAGACTGAGAATTGTTCACAGAGATTTGAAAACCAGCAATATCCTACTAGATGCCTTTATGAATCCAAAAATTTCAGACTTTGGCTTGGCTCGAACATTTTGGGGAGATCAAATTGAAGGCAACACAAGAAGAGTGGTCGGAACATATGGTTACATGCCACCAGAGTATGCTGTGAAAGGTCATTACTCAGTAAAATCAGATATCTTTAGTTTTGGAGTAATAGTATTGGAGATAGTCAGTGGGAAGAAGAATAGGGGATTTTCTGACCAGGAAAGATGCCTTAATCTTCTTGGACATGCATGGAGACTCTGGACTGAAGATAGACCATTGGAACTGATAGACAAACACTTATGTAAAAGCTTCAACTCATCTGAAGTCATACGATGCATAAATGTGGGTTTGTTATGTGTACAACAAAAACCAGAAGACAGGCCAGACATATCCTCTGTTGTTCTAATGCTGAATGGAGAGAAATTACTGCCCCGGCCAAAGGCTCCTGGATTTTATATTGGAAATGGTTTACCCGAAGAAGAATCTTCATCTAAAACAGACAAAGTGTTCACCCGAAATGAGATTTCCCTTACAATTTTTGAAGCAAGATAG	1842	0.3914	MILLWEDFLQDLTLEDIPKLLLITFKGSNKKIRTGPWNGESLVGYPVSTPKISQKFVLNEKEVYYEYKILDSSVFIVYTLTPSGIAESLFWTSESGNREVFSTGEEDQCEHYAFCGANSVCSVDGYHATCECLKGYVPKFPEIWNISFSSGCVPRNKSNCSENSYTDGFLKYTHIKLPDTVSSWFNETMNLEECHKSCLKNCSCVAYANLDISNGGSGCLVWFNNLVDLRKFSRWGQDLYVRVPASELDHVAVNGHGNKMKKLIGITVGVIIFGFITCVSIIIYRKRVAARVYHLAPFQWRYEYFRLRKEDMDLPIFDLSIIVKATDNFSSRNKLGEGGFGPVYKGTLADGQEVAIKRHSKMSDQGVEEFKNEVLLIAKLQHHEPRSKLLDWPQRFHIIGGVARGLLYLHQDSRLRIVHRDLKTSNILLDAFMNPKISDFGLARTFWGDQIEGNTRRVVGTYGYMPPEYAVKGHYSVKSDIFSFGVIVLEIVSGKKNRGFSDQERCLNLLGHAWRLWTEDRPLELIDKHLCKSFNSSEVIRCINVGLLCVQQKPEDRPDISSVVLMLNGEKLLPRPKAPGFYIGNGLPEEESSSKTDKVFTRNEISLTIFEAR.	614

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g05264	613	Pfam	S-locus glycoprotein domain	33	140	IPR000858	GO:0048544
	Seca4g05264	613	SUPERFAMILY	Protein kinase-like (PK-like)	312	567	IPR011009	-
	Seca4g05264	613	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	159	243	-	-
	Seca4g05264	613	SMART	serkin_6	329	567	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g05264	613	ProSiteProfiles	Protein kinase domain profile.	329	573	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g05264	613	Gene3D	Transferase(Phosphotransferase) domain 1	382	573	-	-
	Seca4g05264	613	Gene3D	Hepatocyte Growth Factor	162	240	-	-
	Seca4g05264	613	CDD	PAN_AP_plant	157	244	-	-
	Seca4g05264	613	Pfam	Protein kinase domain	397	499	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g05264	613	Pfam	PAN-like domain	160	229	IPR003609	-
	Seca4g05264	613	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	390	591	-	-
	Seca4g05264	613	ProSiteProfiles	PAN/Apple domain profile.	160	244	IPR003609	-
	Seca4g05264	613	ProSiteProfiles	EGF-like domain profile.	105	142	IPR000742	-
	Seca4g05264	613	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	417	429	IPR008271	GO:0004672\|GO:0006468
	Seca4g05264	613	Gene3D	Phosphorylase Kinase; domain 1	300	381	-	-
	Seca4g05264	613	Pfam	Domain of unknown function (DUF3403)	573	613	IPR021820	GO:0004674
	Seca4g05264	613	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	373	575	-	-
	Seca4g05264	613	SMART	ntp_6	164	243	IPR003609	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g05264	Seca-Chr4	98577637	98580933	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g05264	265	582	Receptor kinase-like Gene Family	AT4G23190	46.961	3.17e-103	323

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Seca4g05264		Pkinase	1.4e-24	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g05264	-		-	gmx:100786000	845.114