Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05263 ATGAATAACATTAGAATGTTACCAATCTACTCTCTTTTATTTTTCTTGATGAGAACCACCACCACCACTTCACTAGACAGTATAACTCCAGGTCAATCCATCCGATATGAATATGATGAAAGATTAGTTTCAGCCTCTGCAACTTTTGAGCTGGGCTTTTTCCGCCCTCGAACTTCTAAGGCTCTATACCTTGGAATATGGTACAAGAATTCTCCTTCAACAGTAGTATGGGTGGCCAACAGAGAAGCACCACTCAACGATACCTCTGGCGTTTTACAACTCAATGATCAAGGAATTCTTGTCCTTATTGATGCCACAAATAGCACTGTCTGGTCATCCAAAATATCAGGCAAACCAGAGAATCCAATTGCACAGCTCATGGACTCGGGAAATCTTCTTGTGAGAAATGAACACGACAATAACAGGGGAAATCTATTATGGCAGAGCTTTGATTATCCAAGTGATACATTATTGCCAGGAATGAAAATTGGATGGAACTTAGAAACTGGTCTAGAAAGGGTTGTGTCATGTTGGAAAAGTGCAGATGATCCTGGTCTTGGTGATTACAAAGTTAGAATAGACCTTCAAGGCTATCCACAAGGTGTTCAACTGAAAGGAAATGTTATACAGGCTAGAGCAGGACATTGGAATGGCCTTACTTTTACAGGATATCCAGCTCAAAAGGCTAATCTAGTATTTAAAGAGGACTTTGTGATCAATGAGAAAGAAGTATATCTTCAGTTTGAGCGTCTGAATAGATCAATTTTCCCAAGATATGTCCTTTCTCCTTCAGGTATGGTACAGTGGTCAGTCTGGAGAAGTCAAACAAGCAGCTGGGAGCAAATCTCTGTTTCCCTAATAGATCAATGTGCAAATTATGCTTTGTGTGGTCCATATTCAATTTGCAATATTAGTAACTACACTCCTGTTTGTGCATGCCTGAGAGGATTTGTCCCCAAACATCCACAGGAATGGAAAATGTCATATTGGTCTAAGGGATGCATTCGTAGCAGCAAATTGGATTGTAGTAGTAATAATAATAATAATACTGATGGCTTTGTGAGGTACATGGGTTTGAAGTTACCAGACACGTCTTCTTCATGGTATAACAAGACCATGGACCTTATGGAATGCCAAAAATCTTGTTTGCAAAACTGTTCCTGTACAGCATATGCAAATTTGGATATACGGGATGGAGGAAGTGGCTGCTTACTTTGGTTTAATGATCTGATTGATATGAGTCAATTCTCTCAAGGGGGACAAGACCTTTATATACGAGTTCCTGCTTCAGAGCTAGGCAGTCCTGCGGCAAACCATGGCCATGGGAACTCCACCAAGAAGAAGCTAGTAGGAATAGTAGTTGGATCCACAACATTAATCATAGGCTTGATAATTCTTGGATGTAAGTCATCCGTAATCAAAAAGAAACTTTACAGTTCAGTGGCAGGAAGAATGTTTTATTGGAAGCAATACAAAAATAGATTGAAGAAGGAAGATATGGATCTGCCAATATTCGATTTTTCAGTCATTGCTAAAGCCACTAATAATTTTTCAAGCACAAATAAATTGAGGGAAGGTGGATTTGGACCGGTGTATAAGGGTACACTGATAGATCGACAAGAAGTAGCCATAAAAAGGCACTCAAAGAAGTCTGATCAAGGATTGGAGGAGTTTAAAAATGAAGTTTTATTGATTGCCAAACTTCAGCACCGTAATCTTGTGAAGCTTCTTGGTTGCTGCATTCAAGGAGAGGAAAAAATGTTGGTCTATGAATACATGCCCAACAAGAGCTTGGACTACTTCCTCTTTGAAGAACCTAAAAGCAAGCTCTTGGATTGGCTTCAGCGTTTCCACATTATTGGTGGTGTTGCTAAAGGGCTTCTCTATCTTCACCAAGATTCTAGACTGAGAATCATTCACAGAGATTTGAAAATCAGCAATATCCTACTAGATGCATATATGAATCCAAAAATTTCAGATTTTGGTTTAGCTCGGACATTTTGGGGAGATCAAATTGAAGCCAATACAAAAAAAGTGGTTGGAACATATGGTTACATGCCACGAGAGTATGCTGTGCATGGTCAATACTCGGTAAAATCAGATATTTTTAGTTTTGGAGTTATGGTACTGGAGATAGTCAGTGGGAAGAAGAATAGGGGATTTTCTGACCAGGAAAGATGCCTTAGTCTTCTTGGACATGCATGGAGACTCTGGACTGAAGATAGACCATTGGAACTGATAGAAAAACACTTATGTGAAAGCTGCAACTCATCTGAGGTCATACGTTGCATAAATGTGGGTTTGTTATGTGTACAACAAAAACCAGAAGACAGGCCAGACATATCCTCTGTTGTTCTTATGCTAAATGGTGAGAAATTATTGCCACCGCCAAAGGCTCCAGGATTTTATACAGGAAGTTATTTGCCTGAAACAGAATCTTCACCTAGAATACACAATCTGTTCTCCCCAAATGAGATGTCGCTTACAATTTTCGAAGCAAGATAG 2505 0.3944 MNNIRMLPIYSLLFFLMRTTTTTSLDSITPGQSIRYEYDERLVSASATFELGFFRPRTSKALYLGIWYKNSPSTVVWVANREAPLNDTSGVLQLNDQGILVLIDATNSTVWSSKISGKPENPIAQLMDSGNLLVRNEHDNNRGNLLWQSFDYPSDTLLPGMKIGWNLETGLERVVSCWKSADDPGLGDYKVRIDLQGYPQGVQLKGNVIQARAGHWNGLTFTGYPAQKANLVFKEDFVINEKEVYLQFERLNRSIFPRYVLSPSGMVQWSVWRSQTSSWEQISVSLIDQCANYALCGPYSICNISNYTPVCACLRGFVPKHPQEWKMSYWSKGCIRSSKLDCSSNNNNNTDGFVRYMGLKLPDTSSSWYNKTMDLMECQKSCLQNCSCTAYANLDIRDGGSGCLLWFNDLIDMSQFSQGGQDLYIRVPASELGSPAANHGHGNSTKKKLVGIVVGSTTLIIGLIILGCKSSVIKKKLYSSVAGRMFYWKQYKNRLKKEDMDLPIFDFSVIAKATNNFSSTNKLREGGFGPVYKGTLIDRQEVAIKRHSKKSDQGLEEFKNEVLLIAKLQHRNLVKLLGCCIQGEEKMLVYEYMPNKSLDYFLFEEPKSKLLDWLQRFHIIGGVAKGLLYLHQDSRLRIIHRDLKISNILLDAYMNPKISDFGLARTFWGDQIEANTKKVVGTYGYMPREYAVHGQYSVKSDIFSFGVMVLEIVSGKKNRGFSDQERCLSLLGHAWRLWTEDRPLELIEKHLCESCNSSEVIRCINVGLLCVQQKPEDRPDISSVVLMLNGEKLLPPPKAPGFYTGSYLPETESSPRIHNLFSPNEMSLTIFEAR. 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05263 834 CDD STKc_IRAK 525 790 - -
Seca4g05263 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 482 592 - -
Seca4g05263 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 342 427 - -
Seca4g05263 834 Gene3D - 20 150 IPR036426 -
Seca4g05263 834 SMART blect_4 33 153 IPR001480 -
Seca4g05263 834 Pfam D-mannose binding lectin 74 179 IPR001480 -
Seca4g05263 834 CDD PAN_AP_plant 339 428 - -
Seca4g05263 834 Pfam S-locus glycoprotein domain 212 320 IPR000858 GO:0048544
Seca4g05263 834 Pfam PAN-like domain 347 413 IPR003609 -
Seca4g05263 834 CDD B_lectin 39 153 IPR001480 -
Seca4g05263 834 ProSiteProfiles PAN/Apple domain profile. 342 428 IPR003609 -
Seca4g05263 834 Pfam Protein tyrosine and serine/threonine kinase 520 786 IPR001245 GO:0004672|GO:0006468
Seca4g05263 834 PIRSF SRK 1 834 IPR024171 GO:0004674
Seca4g05263 834 ProSiteProfiles EGF-like domain profile. 286 323 IPR000742 -
Seca4g05263 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 150 - -
Seca4g05263 834 Gene3D Transferase(Phosphotransferase) domain 1 593 793 - -
Seca4g05263 834 Gene3D Phosphorylase Kinase; domain 1 490 592 - -
Seca4g05263 834 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 778 - -
Seca4g05263 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Seca4g05263 834 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 184 IPR036426 -
Seca4g05263 834 SMART ntp_6 348 427 IPR003609 -
Seca4g05263 834 SUPERFAMILY Protein kinase-like (PK-like) 501 788 IPR011009 -
Seca4g05263 834 Gene3D Hepatocyte Growth Factor 345 425 - -
Seca4g05263 834 ProSiteProfiles Bulb-type lectin domain profile. 19 147 IPR001480 -
Seca4g05263 834 Pfam Domain of unknown function (DUF3403) 794 834 IPR021820 GO:0004674
Seca4g05263 834 ProSiteProfiles Protein kinase domain profile. 517 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05263 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 593 796 - -
Seca4g05263 834 SMART serkin_6 517 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05263 Seca-Chr4 98546338 98549994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05263 505 803 Receptor kinase-like Gene Family AT4G23140 58.824 7.51e-125 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05263 PK_Tyr_Ser-Thr 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05263 - - aprc:113865090 1017.3