Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05259 ATGGTTGATAACATCAAGGTATTGTTAATTTGTTCGTTCCTTTTACTCTCCTACATGAGAACATGCAATTCACTAGACAGTTTAGCTTTGAACCAATCAATCCGAGATGGCCAAACTTTAGTTTCAGCACACGGAACTTTTGAAGTGGGGTTCTTCAGCCCTGGAAATTCAACAAATCGATATTTGGGTATGTGGTACAGAAATTTATCCCCTGTAACGATCGTGTGGGTGGCCAACCGGGAAACACCTCTCTTGAATAAGTCAGGGGTTTTAAAACTCAATGAAAAGGGGGTTCTTTTGATTCTCAATGGCACGAACAACACTGTTTGGTCGTCCAACTTATCAAACAAAGCCGTGAATAATCCAGTAGCACAGCTCATGGAAACAGGAAATCTTGTGGTGAAAAATGGAATGGATACTAATGAAGACAATCTTTTGTGGCAGAGTTTTGATTATCCATGTGATACATTATTACCAGGAATGAAACTTGGATGGAACTTAGTAACCGGTCTAGACATTTTTTTCTCATCTTGGAAAAGTGCAGATGATCCAGCTAAGGGAGATTATTCTGTAAATATTGACAAAAGAGGATATCCCCAACTAGTTTTTATGAAGGGGTCTGTCATAAAATTTAGAATGGGGTCATGGAATGGCCATAGTTTTACGGGATATCCAAGTCAACAATTGAAACAGAATCAGAGATTTAAATTTGTCTTCGACTCAAAACAAGTGTATCATCAGTACGAAGTCCTTGATAGCTCCATTGTCTCCATATATACACTGACCCCTTCAGGTGTTTCACAGGCTTTAGCTTGGACAAATCAAACAAGCGCAAGGATTGATATCAACACTGGAGCGGAAGACCCGTGTGATAATTATGCCACGTGTGGTGCAAATTCTATATGCAATATGGATGGAAATATTGCCGTATGTGAATGCCTGAAAGGATATGTTCCCAAGTTTCGTGAAGAGTGGAATATATCATATTGGTCTAACGGTTGTGTTCCAAGGAATAAATCCAATTGTGCAAACAACACTGATGGCTTTTTGATGTACACTAACATGAAATTGCCAGACACATCTTCTTCATGGTTTAGTAAGACCATGAACCTTGTGGAATGCAAGAAGTCATGTCTGAAAAATTGTTCATGTACAGCTTATGCAAATTTGGATATCCGCAGTGATGGAAGTGGTTGTCTGCTTTGGTTTGATGAACTGGTTGACATAAGGAGCTTCTCTGAATGGGGACAAGACCTTTATATTAGAGTCCCTGCTTCTGAACTAGGTACACACAATAATGGTGCGGTCAGTGGCCACAGAAACAAGAGGAAGAAGCTCATAGGAATCATAGTTGGCGTGATTAGTTTTGGATTAATTACATGTTTCTCCATAATAATACAAAGAAAGCGAGGTAAAAATTCTGTATTAGATATTATACATGAATATCTTAGATTGGAGAAGGAAGACATGGATATACCAATATTTGATTTGTCAATCATTGTTAAAGCCACTGATAATTTTGCTAGCAGAAATAAACTTGGGGAAGGTGGATTTGGACCAGTCTATAAGGGTACATTGATAGATGGGAAAGAGGTAGCCATAAAACGGCACTCAAAGATGTCTGATCAAGGATTGGAGGAGTTTAAAAATGAAGTTGTGTTGATTGCAAAACTTCAGCACCGTAATCTTGTGAAGCTCCTTGGTTGCTGCATTCAAGGAGAGGAAAAATTGTTGATCTATGAATATATGCCCAACAAGAGCTTAGACTACTTCATCTTTGATGAAAATAGAAGCAACCTCTTGGCCTGGCCTAAGCGTTTCCACATTATTGGTGGCATTGCTCGAGGACTTCTGTATCTTCACCAAGACTCTAGACTCAGAATTATTCACAGAGATTTGAAAACCAGCAATATCCTATTGGATGCCCATATGAATCCAAAAATCACAGACTTTGGCTTGGCTCGGACTTTTGGGGGAGATCAAGTTGAAGCCAAAACAAAAAGAATGGTTGGAACATATGGTTACATGCCTCCAGAGTATGTTGTTCATGGTCATTACTCAGTGAAATCAGATGTCTTTAGCTTTGGTGTAATAATGCTAGAGATAGTCTGTGGGAAGAAGAATACTGGATTTTCAAAGCCAGAACACTGTCTTAATCTTCTTGGACATGCATGGAGACTATGGACTGAAAACATGCCACTGGAACTGCTAGACAGACACACACTTGAAACATGCATTCCTTATCAAGTCTTACGATGCATACATGTGGGTTTGTTGTGTGTTCAACAAAAGCCAGGAGACAGGCCAGACATGTCCTCTGTCATTCTTATGCTGAATGGTGAGAAATTATTGCCTCAACCGAAGGCTCCTGCATTTTATACTGGAAGGGGTTTACCTGATGCAGTATCCTCATCCTCAAATCAGATGTCACTTACAATTTTTGAGGCAAGATAG 2454 0.3945 MVDNIKVLLICSFLLLSYMRTCNSLDSLALNQSIRDGQTLVSAHGTFEVGFFSPGNSTNRYLGMWYRNLSPVTIVWVANRETPLLNKSGVLKLNEKGVLLILNGTNNTVWSSNLSNKAVNNPVAQLMETGNLVVKNGMDTNEDNLLWQSFDYPCDTLLPGMKLGWNLVTGLDIFFSSWKSADDPAKGDYSVNIDKRGYPQLVFMKGSVIKFRMGSWNGHSFTGYPSQQLKQNQRFKFVFDSKQVYHQYEVLDSSIVSIYTLTPSGVSQALAWTNQTSARIDINTGAEDPCDNYATCGANSICNMDGNIAVCECLKGYVPKFREEWNISYWSNGCVPRNKSNCANNTDGFLMYTNMKLPDTSSSWFSKTMNLVECKKSCLKNCSCTAYANLDIRSDGSGCLLWFDELVDIRSFSEWGQDLYIRVPASELGTHNNGAVSGHRNKRKKLIGIIVGVISFGLITCFSIIIQRKRGKNSVLDIIHEYLRLEKEDMDIPIFDLSIIVKATDNFASRNKLGEGGFGPVYKGTLIDGKEVAIKRHSKMSDQGLEEFKNEVVLIAKLQHRNLVKLLGCCIQGEEKLLIYEYMPNKSLDYFIFDENRSNLLAWPKRFHIIGGIARGLLYLHQDSRLRIIHRDLKTSNILLDAHMNPKITDFGLARTFGGDQVEAKTKRMVGTYGYMPPEYVVHGHYSVKSDVFSFGVIMLEIVCGKKNTGFSKPEHCLNLLGHAWRLWTENMPLELLDRHTLETCIPYQVLRCIHVGLLCVQQKPGDRPDMSSVILMLNGEKLLPQPKAPAFYTGRGLPDAVSSSSNQMSLTIFEAR. 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05259 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 583 786 - -
Seca4g05259 817 PIRSF SRK 2 817 IPR024171 GO:0004674
Seca4g05259 817 CDD STKc_IRAK 513 780 - -
Seca4g05259 817 Gene3D - 21 150 IPR036426 -
Seca4g05259 817 CDD B_lectin 31 153 IPR001480 -
Seca4g05259 817 Gene3D Transferase(Phosphotransferase) domain 1 583 785 - -
Seca4g05259 817 Pfam PAN-like domain 342 409 IPR003609 -
Seca4g05259 817 Pfam Protein tyrosine and serine/threonine kinase 510 774 IPR001245 GO:0004672|GO:0006468
Seca4g05259 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Seca4g05259 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 472 582 - -
Seca4g05259 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 184 IPR036426 -
Seca4g05259 817 Pfam S-locus glycoprotein domain 211 321 IPR000858 GO:0048544
Seca4g05259 817 ProSiteProfiles PAN/Apple domain profile. 342 424 IPR003609 -
Seca4g05259 817 SUPERFAMILY Protein kinase-like (PK-like) 490 778 IPR011009 -
Seca4g05259 817 SMART serkin_6 507 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05259 817 Gene3D Phosphorylase Kinase; domain 1 482 582 - -
Seca4g05259 817 CDD PAN_AP_plant 339 424 - -
Seca4g05259 817 ProSiteProfiles Protein kinase domain profile. 507 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05259 817 Pfam D-mannose binding lectin 73 179 IPR001480 -
Seca4g05259 817 ProSiteProfiles Bulb-type lectin domain profile. 25 147 IPR001480 -
Seca4g05259 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 341 423 - -
Seca4g05259 817 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 768 - -
Seca4g05259 817 SMART ntp_6 344 423 IPR003609 -
Seca4g05259 817 SMART blect_4 31 153 IPR001480 -
Seca4g05259 817 Gene3D Hepatocyte Growth Factor 340 420 - -
Seca4g05259 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05259 Seca-Chr4 98492026 98495286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05259 488 793 Receptor kinase-like Gene Family AT4G11480 58.842 2.42e-124 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05259 PK_Tyr_Ser-Thr 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05259 - - aprc:113865090 1202.19