Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05258 ATGGTGGATAACATCAAGGTATTGTTAATTTGTTCGTTCTTTTTACTCTCATACATGAGAACATGCAATTCACTAGACAGTTTAGCTTTGAACCAATCAATCCGAGATGGCCAAACTTTAGTTTCAGCACATGGAACTTTTGAAGTGGGGTTCTTCAGCCCTGGAAATTCAACAAATCGATATTTGGGTATGTGGTACAGAAATTTATCCCCTGTAACGATCGTGTGGGTGGCCAATCGGGAAACACCTCTCCGGAATATGTCAGGGGTTTTGAAACTCAATGAAAAGGGGGTTCTTGTGATTCTTAATGGCACAAATAGCACTGTTTGGTCGTCCAATTTATCAAACAAAACCGTGAATGATCCAGTTGCACAGCTCTTGGAAACGGGAAATCTTGTGGTGAAAAATGGATTGGATACAACTAATGAAGACAATCTTTTATGGCAGAGTTTTGATTATCCATGTGATACATCATTACCAGGAATGAAACTTGGATGGAACTTAGTAACTGGTCTAGACAGGTTTTTATCATCTTGGAAAAGTGCAGATGATCCAGCTAAGGGAGATTATTCTGCAAATATTGACAAAAGAGGATATCCCCAACTAGTTTTTATGAAAAGGTCTGTCATAAGACTTAGAATGGGGCTATGGAATGGCCTTAGTTTTACGGGATATCCAAGTCAACAATTGAAACAGAATCAAAGATATAAATTTGTCTTCAATACAAAAGAAGTGTATCATGAGTATGAAGTCCTTGATTCCGTTGTCTCCCTATATAAACTGACCCCTTCAGGCATTTTGCAGGCTTTAGCTTGGACTAGTCAATCAAGTGAAAGGATTGATATAAACACTGGAGCGGAAGACTCGTGTGATAATTATTCCTTTTGTGGTGCAAATTCCATATGCAATATGGATGGTAACGTTCCCAGATGTGAATGCCTGAGAGGATATGTTCCTAAGTTTCCTGAACAGTGGCATATATCATATTGGTATGGCGGTTGTTCTCCAAGGAATAAATCTGTTTGTCAAAAGAGTAACACAGATGGATTCATGCAGTATAGCGAAATGAAATTGCCAGACACGTCTTCATCATGGTATAACAAGACCATGGATCTTGTGCAATGTCAGAAGAAATGTCTGAAAAATTGTTCATGTACAGCTTATGCAAATTTGGATATCCGTAATGGAGGAAGTGGCTGTTTACTATGGTTTGAGGATCTGGTTGACATGAGGAGGTTCTCTCAAGAGGGTCAAGAGCTTTACATCAGAGTCCCTGCTTCTGAGCTAGGTACAAATTATGATGTTGCGGTTAATGGCCACAGAAACAAGAAGATGCTGATAGCAATCACAGTTGGCGTGATTAGTTTTGGATTAATTACATGTTTCGCCGTAATGATACATAGAAAGCGAGTGGCGGCAAGAGTTCATCATCTTCCACCATTTCAGTGGCAGCAAGTATATTTTAGATTGGAGAAGGAAGACTTGGATCTACCAATATTTGATTTGTCAATCATTGTTAAAGCCACTGACAATTTTGCTAGCAGAAATAAACTTGGGGAAGGTGGATTTGGACCAGTCTATAAGGGTACATTGATAGATGGGAAAGAGGTAGCCATAAAACGGCACTCAAAGATGTCTGATCAAGGATTGGAGGAGTTTAAAAATGAAGTTGTGTTGATTGCAAAACTTCAGCATCGCAATCTTGTGAAGCTCCTTGGTTGCTGCATTCAAGGAGAGGAAAAACTGTTGGTCTATGAATATATGCCCAACAAGAGTTTAGACTACTTCATCTTTGATGAAAATAGAAGCAAGCTCTTGGCCTGGCCTAAGCGTTTCCACATTGTTGGTGGCATTGCTAGAGGACTTCTCTATCTTCACCAAGACTCTAGACTCAGAATTATACACAGAGATTTGAAAACCAGCAATATCCTTTTGGATGCCCATATGAAACCAAAAATCGCAGACTTTGGCTTGGCTCGGACTTTTGGGGGAGATCAAATTGAAGCCAAAACAAAAAGAATGGTTGGAACATATGGTTACATGCCTCCAGAGTATGTTGTTCATGGTCATTACTCTGTGAAATCAGATGTCTTTAGCTTTGGTGTAATAGTGCTAGAGATAGTCAGTGGGAAGAAGAATAAAGGGTTTTCTGAGCCAGAACACTCTCTGAATCTTCTTGGACATGCATGGAGACTCTGGGCTGAAGACAGGCCACTGGAACTGCTAGACAGACACACACTTGAAACATGCATTCCTTATGAAGTCTTACGATGCATACATGTGGGTTTGTTGTGTGTTCAACAAAAGGCAGGAGACAGGCCAGACATGTCCTCTGTCATTCTTATGTTGAATGGTGAGAAGTTATTGCCTCAGCCGAAGGCTCCTGCGTTTTATACTGGAAGGGGTTTACCTGATGCAGTTTCCTTATCTTCAAATCAGATGTCACTTACAATTTTTGAGGCAAGATAG 2469 0.4014 MVDNIKVLLICSFFLLSYMRTCNSLDSLALNQSIRDGQTLVSAHGTFEVGFFSPGNSTNRYLGMWYRNLSPVTIVWVANRETPLRNMSGVLKLNEKGVLVILNGTNSTVWSSNLSNKTVNDPVAQLLETGNLVVKNGLDTTNEDNLLWQSFDYPCDTSLPGMKLGWNLVTGLDRFLSSWKSADDPAKGDYSANIDKRGYPQLVFMKRSVIRLRMGLWNGLSFTGYPSQQLKQNQRYKFVFNTKEVYHEYEVLDSVVSLYKLTPSGILQALAWTSQSSERIDINTGAEDSCDNYSFCGANSICNMDGNVPRCECLRGYVPKFPEQWHISYWYGGCSPRNKSVCQKSNTDGFMQYSEMKLPDTSSSWYNKTMDLVQCQKKCLKNCSCTAYANLDIRNGGSGCLLWFEDLVDMRRFSQEGQELYIRVPASELGTNYDVAVNGHRNKKMLIAITVGVISFGLITCFAVMIHRKRVAARVHHLPPFQWQQVYFRLEKEDLDLPIFDLSIIVKATDNFASRNKLGEGGFGPVYKGTLIDGKEVAIKRHSKMSDQGLEEFKNEVVLIAKLQHRNLVKLLGCCIQGEEKLLVYEYMPNKSLDYFIFDENRSKLLAWPKRFHIVGGIARGLLYLHQDSRLRIIHRDLKTSNILLDAHMKPKIADFGLARTFGGDQIEAKTKRMVGTYGYMPPEYVVHGHYSVKSDVFSFGVIVLEIVSGKKNKGFSEPEHSLNLLGHAWRLWAEDRPLELLDRHTLETCIPYEVLRCIHVGLLCVQQKAGDRPDMSSVILMLNGEKLLPQPKAPAFYTGRGLPDAVSLSSNQMSLTIFEAR. 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05258 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 588 791 - -
Seca4g05258 822 SMART blect_4 31 154 IPR001480 -
Seca4g05258 822 Gene3D - 21 151 IPR036426 -
Seca4g05258 822 ProSiteProfiles Protein kinase domain profile. 512 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05258 822 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 774 - -
Seca4g05258 822 CDD B_lectin 31 154 IPR001480 -
Seca4g05258 822 CDD STKc_IRAK 518 785 - -
Seca4g05258 822 SUPERFAMILY Protein kinase-like (PK-like) 497 783 IPR011009 -
Seca4g05258 822 Pfam S-locus glycoprotein domain 213 321 IPR000858 GO:0048544
Seca4g05258 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Seca4g05258 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 151 - -
Seca4g05258 822 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 185 IPR036426 -
Seca4g05258 822 ProSiteProfiles Bulb-type lectin domain profile. 25 147 IPR001480 -
Seca4g05258 822 Pfam D-mannose binding lectin 73 180 IPR001480 -
Seca4g05258 822 Gene3D Transferase(Phosphotransferase) domain 1 588 790 - -
Seca4g05258 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 480 587 - -
Seca4g05258 822 ProSiteProfiles PAN/Apple domain profile. 342 426 IPR003609 -
Seca4g05258 822 Pfam Protein tyrosine and serine/threonine kinase 515 730 IPR001245 GO:0004672|GO:0006468
Seca4g05258 822 SMART ntp_6 345 424 IPR003609 -
Seca4g05258 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 341 424 - -
Seca4g05258 822 Gene3D Hepatocyte Growth Factor 341 422 - -
Seca4g05258 822 CDD PAN_AP_plant 342 425 - -
Seca4g05258 822 SMART serkin_6 512 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05258 822 Pfam PAN-like domain 342 410 IPR003609 -
Seca4g05258 822 Gene3D Phosphorylase Kinase; domain 1 486 587 - -
Seca4g05258 822 ProSiteProfiles EGF-like domain profile. 286 323 IPR000742 -
Seca4g05258 822 PIRSF SRK 2 821 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05258 Seca-Chr4 98420255 98423794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05258 447 797 Receptor kinase-like Gene Family AT4G23230 54.802 7.37e-126 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05258 PK_Tyr_Ser-Thr 6.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05258 - - aprc:113865090 1237.63