Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05257 ATGCTGATAGGAATCACAGTTGGTCTTATTAGTTTGGGAGTAATTACATGTTTCGCCATAATTATACATAGAAAGCGAGTGGCGGCAAGAGTTCATCATCTTGCACCATTTCAAAGGCAGCAAGAATATTTTAGATTGGAGAAGGAAGACATGGATCTACCAATATTTGATTTGTCAATCATTGTTAAAGCCACTAATAATTTTTCTAGCAGAAATAAACTTGGGGAAGGTGGATTTGGACCGGTCTATAAGGGTACATTGATAGATGGGAAAGAGGTAGCCATAAAACGGCACTCAAAGATGTCTGATCAAGGATTGGATGAGTTTAAAAATGAAGTTGTGTTAATTGCAAAACTTCAGCACCGTAATCTTGTGAAGCTCCTTGGTTGCTGCATTCAAGGAGAGGAAAAATTGTTAATCTATGAATATATGCCTAACAAGAGCTTGGACTACTTCATCTTTGATGAAACTAGAAGCAAGCTACTGGCCTGGCCTCTGCGTTTCCACATTGTTGGTGGTATTGCTCGAGGGCTTCTCTATCTTCACCAAGACTCTAGACTCAGAATTATACACAGAGATTTGAAAACCAGCAATATCCTACTAGATGCCCATATGAATCCAAAAATATCAGACTTTGGCTTGGCTCGGACTTTTGGGGGAGATCAAATTGTAGCCAAAACAAAAAGAATGGTTGGAACATATGGTTACATGCCTCCAGAATATGTTGTTCATGGTCATTACTCTGTGAAATCAGATGTTTTTAGCTTTGGTGTAATAATGCTAGAGATACTCAGTGGGAAGAAGAATACTGGATTTTCTGAGCCAGAACACTCTCTGAATCTTCTTGGACATGCATGGAAACTCTGGGCTGAAGACAGGCCACTCGAACTGCTAGACAGACACACACTTGAAACATGCATTCCTTATGAAGTCTTACGATGCATGCATGTGGGTTTGTTGTGTGTTCAACAAAAGCCAGGAGACAGGCCGGACATGTCCTCTGTCATTCTTATGCTGAATGCATTCACATTCACTGCGTTCCCATCCTATTCAAGAGTCATCCTCTTCCCCTCCGTAACCAAAAACACATACATGATATTGTTAATTTGTTCGTTCTTTTTAGTCTCATACATGAGAACATGCACTTCACTAGACAGTTTAGCTGTGAATCAATCATTCCGTGATGGCCAGACTTTAGTTTCAGCACATGGAACTTTTGAAGTGGGGTTCTTCAGCCCAAGAAATTCAACAAATCGATATTTGGGTATGTGGTACAGAAATTTATCCCCTGTGACGGTGGTATGGGTGGCCAACCGGGAAACACCTCTCTTGAATAAGTCAGGGGTTTTAAAACTCAATGAAAAGGGGGTTCTTTTCATTCTCAATGGCACAAACAGCACTGTTTGGTCATCCAACATATCAAACAAAATGGTGAATAACCCAGTTGCACAGCTCTTGGAAACAGGAAATCTTGTGGTGAGAAATGGAATGGATACTAATGAAGACGATCTTTTGTGGCAGAGTTTTGATTATCCATGTGATACATCATTACCAGGAATGAAACTTGGATGGAACTTAGTAACTGGTCTAGACAGATTTTTATCATCTTGGAAAAGTGCAGATGATCCAGCTAAGGGAGATTATTCTGTAAATATCGACAAAAGAGGATATCCCCGACTAGTTTTTATGAAAAGGTCTGTCATAAGATTTAGAATGGGGCCATGGAATGGCATTAGTTTTACAGGATATCCAAGTCAACAATTGAAACGGAATCAGAGATTTAAATTTGTCTTCAACTCAAAAGAAGTGTATCATGAGTATGAAGTCCTTGATAGTTCCGTTGTCTCCCTATATACATTGACCCCTTCAGGCATTTTGCAGGCTTTAGCTTGGACAAGTCAATCAAGTGGAAGGATTGTTATCAACACTGGAGCGGAAGACTCGTGTGATAATTATTCCTTTTGTGGTGCAAATTCCATATGCAATATGGATGGTAACGTTCCCAGATGTGAATGCCTGAAAGGATATGTTCCTAAGTTTCCTGAACAGTGGAATATATCATATTGGAATAAATCTGTTTGTGAAAAGAGTAACACAGATGGATTCATGCAGTATAGAGAAATGAAATTGCCAGACACGTCTTCATCATGGTATAACAAGACCATGGATCTTGTGCAATGTCAGAAGAAATGTCTGAAATTTTGTTCATGTACAGCTTATGCAAATTTGGATATCCGTCATGGAGGAAGTGGCTGTTTAATATGGTTTGATGATCTGGTTGACATGAGGAGGTTCTCTCAAAAGGGTCAAGAGCTTTACATCAGAGTCCCTGCTTCTGAGCTAGGTACACATTTTGTTTTCATTCATCTGTTTTTCCTTTCTGATATTGGGTTGACTATATTTCACTATTCTAACAAGAACAAAAAGGAAGACTTGGATCTACCAATATTTGATTTGTCAGTCATTGTTAAAGCCACTAATAATTTTGCTAGCAGAAATAAACTTGGGGAAGGTGGATTTGGATCAGTCTATAAGGGTACATTGATAGATGGGAAAGAGGTAGCCATAAAACGGCACTCAAAGATGTCTGATCAAGGATTGGAGGAGTTTAAAAATGAAGTTATGTTGATTGCAAAACTTCAGCATCGTAATCTTGTGAATCTCCTTGGTTGCTGCATTCAAGGAGAGGAACAATTGTTGGTCTATGAATATATGCCCAACAAGAGTTTAGACTACTTCATCTTTGATGAAAATAGAAGCAAGCTCTTGGCCTGGCCTAAGCGTTTCCACATTGTTGGTGGCATTGCTAGAGGGCTTCTCTATCTTCACCAGGACTCTAGACTTAGAATTATACACAGAGATTTGAAAACCAGCAATATCCTATTAGATGCCCATATGAAACCAAAAATCTCAGATTTTGGCTTGGCTCGGACTTTTGGGGGAGATCAAATTGAAGCCAAAACAAAAAGAATGGTTGGAACATATGGTTACATGCCTCCAGAGTATGTTGTTCATGGTCATTACTCCGTGAAATCAGATGTCTTTAGCTTTGGTGTAATAGTGCTAGAGATAGTCAGTGGGAAGAAGAATAAAGGATTTTCAGAGCCAGAACACTCTCTTAATCTTCTTGGACATGCATGGAGGCTCTGGACTGAAGACAGGCCACTCGAACTGCTAGACACACACACAATTGAAACATGCATTCCTTCTGAAATCTTACGATGCATACATGTGGGTTTGTTGTGTGTTCAGCAAAAGCCCGGAGACAGGCCAGACATGGCCTCTGTCATTCTTATGCTGAATGGTGAGAAGTTATTGCCTCAGCCGAAGGCTCCTGCATTTTATACTGGAAGGGGTTTACCTGACATAGTATCCTCATCCTCAAATCAGATGTCACTTACAATTTTTGAGGCAAGATAG 3420 0.3977 MLIGITVGLISLGVITCFAIIIHRKRVAARVHHLAPFQRQQEYFRLEKEDMDLPIFDLSIIVKATNNFSSRNKLGEGGFGPVYKGTLIDGKEVAIKRHSKMSDQGLDEFKNEVVLIAKLQHRNLVKLLGCCIQGEEKLLIYEYMPNKSLDYFIFDETRSKLLAWPLRFHIVGGIARGLLYLHQDSRLRIIHRDLKTSNILLDAHMNPKISDFGLARTFGGDQIVAKTKRMVGTYGYMPPEYVVHGHYSVKSDVFSFGVIMLEILSGKKNTGFSEPEHSLNLLGHAWKLWAEDRPLELLDRHTLETCIPYEVLRCMHVGLLCVQQKPGDRPDMSSVILMLNAFTFTAFPSYSRVILFPSVTKNTYMILLICSFFLVSYMRTCTSLDSLAVNQSFRDGQTLVSAHGTFEVGFFSPRNSTNRYLGMWYRNLSPVTVVWVANRETPLLNKSGVLKLNEKGVLFILNGTNSTVWSSNISNKMVNNPVAQLLETGNLVVRNGMDTNEDDLLWQSFDYPCDTSLPGMKLGWNLVTGLDRFLSSWKSADDPAKGDYSVNIDKRGYPRLVFMKRSVIRFRMGPWNGISFTGYPSQQLKRNQRFKFVFNSKEVYHEYEVLDSSVVSLYTLTPSGILQALAWTSQSSGRIVINTGAEDSCDNYSFCGANSICNMDGNVPRCECLKGYVPKFPEQWNISYWNKSVCEKSNTDGFMQYREMKLPDTSSSWYNKTMDLVQCQKKCLKFCSCTAYANLDIRHGGSGCLIWFDDLVDMRRFSQKGQELYIRVPASELGTHFVFIHLFFLSDIGLTIFHYSNKNKKEDLDLPIFDLSVIVKATNNFASRNKLGEGGFGSVYKGTLIDGKEVAIKRHSKMSDQGLEEFKNEVMLIAKLQHRNLVNLLGCCIQGEEQLLVYEYMPNKSLDYFIFDENRSKLLAWPKRFHIVGGIARGLLYLHQDSRLRIIHRDLKTSNILLDAHMKPKISDFGLARTFGGDQIEAKTKRMVGTYGYMPPEYVVHGHYSVKSDVFSFGVIVLEIVSGKKNKGFSEPEHSLNLLGHAWRLWTEDRPLELLDTHTIETCIPSEILRCIHVGLLCVQQKPGDRPDMASVILMLNGEKLLPQPKAPAFYTGRGLPDIVSSSSNQMSLTIFEAR. 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05257 1139 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 471 1125 - -
Seca4g05257 1139 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Seca4g05257 1139 SUPERFAMILY Protein kinase-like (PK-like) 49 339 IPR011009 -
Seca4g05257 1139 Gene3D Transferase(Phosphotransferase) domain 1 905 1107 - -
Seca4g05257 1139 Gene3D Transferase(Phosphotransferase) domain 1 144 347 - -
Seca4g05257 1139 Pfam D-mannose binding lectin 432 538 IPR001480 -
Seca4g05257 1139 ProSiteProfiles Protein kinase domain profile. 829 1106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05257 1139 ProSiteProfiles Bulb-type lectin domain profile. 384 506 IPR001480 -
Seca4g05257 1139 CDD STKc_IRAK 835 1102 - -
Seca4g05257 1139 ProSiteProfiles EGF-like domain profile. 645 682 IPR000742 -
Seca4g05257 1139 Pfam PAN-like domain 694 762 IPR003609 -
Seca4g05257 1139 SMART blect_4 390 512 IPR001480 -
Seca4g05257 1139 Pfam Protein tyrosine and serine/threonine kinase 71 336 IPR001245 GO:0004672|GO:0006468
Seca4g05257 1139 Pfam Protein tyrosine and serine/threonine kinase 832 1096 IPR001245 GO:0004672|GO:0006468
Seca4g05257 1139 SMART serkin_6 829 1098 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05257 1139 SMART serkin_6 68 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05257 1139 Gene3D Phosphorylase Kinase; domain 1 29 143 - -
Seca4g05257 1139 SUPERFAMILY alpha-D-mannose-specific plant lectins 433 543 IPR036426 -
Seca4g05257 1139 CDD PAN_AP_plant 694 777 - -
Seca4g05257 1139 Gene3D Hepatocyte Growth Factor 693 774 - -
Seca4g05257 1139 SUPERFAMILY Protein kinase-like (PK-like) 814 1100 IPR011009 -
Seca4g05257 1139 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 905 1108 - -
Seca4g05257 1139 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 144 346 - -
Seca4g05257 1139 Gene3D - 379 509 IPR036426 -
Seca4g05257 1139 CDD B_lectin 390 512 IPR001480 -
Seca4g05257 1139 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 33 143 - -
Seca4g05257 1139 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 693 776 - -
Seca4g05257 1139 ProSiteProfiles PAN/Apple domain profile. 694 778 IPR003609 -
Seca4g05257 1139 ProSitePatterns Protein kinases ATP-binding region signature. 835 857 IPR017441 GO:0005524
Seca4g05257 1139 CDD STKc_IRAK 74 340 - -
Seca4g05257 1139 SMART ntp_6 697 776 IPR003609 -
Seca4g05257 1139 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 379 509 - -
Seca4g05257 1139 ProSiteProfiles Protein kinase domain profile. 68 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05257 1139 Gene3D Phosphorylase Kinase; domain 1 802 904 - -
Seca4g05257 1139 Pfam S-locus glycoprotein domain 570 680 IPR000858 GO:0048544
Seca4g05257 1139 ProSitePatterns Serine/Threonine protein kinases active-site signature. 950 962 IPR008271 GO:0004672|GO:0006468
Seca4g05257 1139 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 797 904 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05257 Seca-Chr4 98387428 98394634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05257 56 345 Receptor kinase-like Gene Family AT4G23230 60.000 1.48e-118 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05257 PK_Tyr_Ser-Thr 6.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05257 - - aprc:113865090 1469.52