Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05254 ATGTCCTACTACATTAAAGCCACCACTTCACTAGACACTTTATCAGTGAGTCAAACTATCCGAGATGGTGAGACTTTAGTTTCAGCAAGTGGAATTATTGAAGTGGGTTTCTTTAGCCCAGGAAATTCAACACGTCGATACTTGGGTGTATGGTACAGGAATGTATCCCCTTTAACAGTGGTATGGGTGGCCAACAGAGAAACACCTCTACTCAATAATTCTGGAGTTCTGAAACTCAATGACAAGGGAATTCTTCACCTTTTCAATGGCACAGACAGCGCTATTTGGTCGTCTAATATATCAAGCAAGGCAGCAGGGAATAATCCAATTGCTCAGATCTTGGATTCAGGAAATTTGGTAGTAAAAAATGGAATGGAAACTGACAAGAACAAATTTTTGTGGCAGAGTTTTGATTATCCCTGTGATACTTTGATGCCAGGGATGAAGCTTGGATGGGACTTAGAAACTGGTCTAGAAAGATTTCTTACATCTTGGAAAAGTGATGATGATCCTTCTAAGGGAGAATTTACTACAAGAGTTGACCTTAGAGGGTATCCCCAAATAATTAAATTCGAAGGCCCTGTTAAAAAAATTAGAAGAGGGCCATGGAATGGCGAGGCTATGGCGGGATATCCAGGAATATCTACTGCAGTATCACAAATGTTTGTCTTCAATGAAAAGGAAGTGTATTATGAGTACGAAATCCTTGATAGTTCATTTTTCACAGTATACACACTGACCCCTTCAGGCACTGGCCATAATTTAATGTGGACAATTCAATCAAGCAGCAGAGAAGCCACCACAACTGTGGAGGAAGATCAGTGCGAAACTTATGCCTTTTGTGGTGCAAATTCTATATGTAATATTGATGGTAACAATCCAACTTGTGAATGCTTGAAAGGATATGTTCCCAAGTTTCCTAAACAATGGAACCTATCATTTTGGCTTAACGGTTGTGTTCCAAGGAATAAATCTAATTGCAATAGCAGTTATACAGATGGCTTCTTGAACTACAAAGGAATGAAATTGCCAGACACGTCTTCTTCGTCATGGTTTAGTACTACCATGAACCTTGAGGAATGTAAAAAGTCATGTCTGAAAAACTGTTCATGTACAGCATATACAAATTTGGATATCCGTAATGGGGGAAGTGGCTGTCTACTTTGGTTTGATGATTTGGTTGACATGAGGAAATACACTCAATGGGGACAAGATCTTTATATCAGAGTCCCTGCTTCAGAACTAAGTTGGTGTACTAAAAGTTGGTTATTAATCAATAATAACGCTCTGCATCTTTCAGATCATGTTGCGACTAATGGCCACGGAAAAATCAAGAAGATAGTAGGAATCACAGTTGGCGTGATTATTTTTGGATTAATCACATGTGTATGCATATTGGCACTAAAAAAGAGAAAACGAAAAAATATGCATATTTTGTGCTGTAGTTCTTACCAAGTGGTATCTTCCAACCAATTAGGGGCAGCAATAATTATTTGCAATGAGCATTACCAAAAAACAATGAGGAAGGAAGAGGTTGATCTGCCAACATTCAATTTGTCGGTCTTAGCTGATGCCACTGAAAACTTTTCAAGCGTTAACAGACTCGGAGAAGGTGGTTTTGGAACGGTATACAAGGGAACACTATCAAATGGACAAGAGATAGCCGTGAAAAGGCTTTCAAAGAAGTCGGGACAAGGATCAGAGGAGTTCGAAAATGAAGTGGCATTGATCGCCAAACTACAACATCGTAATCTTGTAAAGCTTCTTGGTTGCTGCATTCAAGGAGAAGAAAAAATGTTGATCTATGAATACATGCCAAACAAAAGCTTGGACTACTTATTTTTGGATAAAACCAAAAGGGTGTTGCTAGATTGGCACAAGCGATTCAACATTATCAGTGGCATTGCTCGAGGACTTCTTTATCTTCATCAAGATTCTAGATTGAGGATTATTCATAGGGATGTAAAAGCTAGCAATGTCTTACTAGATGAAAATTTGGATCCAAAAATATCCGACTTTGGCTTGGCCAGAACACTTTTGGGAGATCAAGTTGAGGCAAACACAAATAGGGTGGCTGGAACCCATGGTTACATGCCTCCTGAGTATGCTATGCGCGGTCATTTCTCAATGAAATCAGATGTCTTTAGTTATGGTGTGATAGTATTGGAGATTGTAAGTGGGAAGAAGAACAGTGAATTTTCAGACCCAAAACACTGCCATAATCTTCTTGGATATGCATGGAGATTATGGACAGAAGAAAGGGAGCTAGAACTAGTGGATGAAGTATTAGGGGAAAAATGCACACCCTCTGAAGTCATAAGATGCATACAGGTGGGCCTATTATGCGTGTAA 2352 0.3924 MSYYIKATTSLDTLSVSQTIRDGETLVSASGIIEVGFFSPGNSTRRYLGVWYRNVSPLTVVWVANRETPLLNNSGVLKLNDKGILHLFNGTDSAIWSSNISSKAAGNNPIAQILDSGNLVVKNGMETDKNKFLWQSFDYPCDTLMPGMKLGWDLETGLERFLTSWKSDDDPSKGEFTTRVDLRGYPQIIKFEGPVKKIRRGPWNGEAMAGYPGISTAVSQMFVFNEKEVYYEYEILDSSFFTVYTLTPSGTGHNLMWTIQSSSREATTTVEEDQCETYAFCGANSICNIDGNNPTCECLKGYVPKFPKQWNLSFWLNGCVPRNKSNCNSSYTDGFLNYKGMKLPDTSSSSWFSTTMNLEECKKSCLKNCSCTAYTNLDIRNGGSGCLLWFDDLVDMRKYTQWGQDLYIRVPASELSWCTKSWLLINNNALHLSDHVATNGHGKIKKIVGITVGVIIFGLITCVCILALKKRKRKNMHILCCSSYQVVSSNQLGAAIIICNEHYQKTMRKEEVDLPTFNLSVLADATENFSSVNRLGEGGFGTVYKGTLSNGQEIAVKRLSKKSGQGSEEFENEVALIAKLQHRNLVKLLGCCIQGEEKMLIYEYMPNKSLDYLFLDKTKRVLLDWHKRFNIISGIARGLLYLHQDSRLRIIHRDVKASNVLLDENLDPKISDFGLARTLLGDQVEANTNRVAGTHGYMPPEYAMRGHFSMKSDVFSYGVIVLEIVSGKKNSEFSDPKHCHNLLGYAWRLWTEERELELVDEVLGEKCTPSEVIRCIQVGLLCV. 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05254 783 ProSiteProfiles Protein kinase domain profile. 529 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05254 783 ProSiteProfiles Bulb-type lectin domain profile. 11 134 IPR001480 -
Seca4g05254 783 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 171 IPR036426 -
Seca4g05254 783 ProSiteProfiles EGF-like domain profile. 271 308 IPR000742 -
Seca4g05254 783 Pfam PAN-like domain 327 396 IPR003609 -
Seca4g05254 783 Gene3D Phosphorylase Kinase; domain 1 493 604 - -
Seca4g05254 783 Pfam S-locus glycoprotein domain 199 306 IPR000858 GO:0048544
Seca4g05254 783 ProSiteProfiles PAN/Apple domain profile. 327 411 IPR003609 -
Seca4g05254 783 CDD STKc_IRAK 535 783 - -
Seca4g05254 783 CDD PAN_AP_plant 324 411 - -
Seca4g05254 783 SMART ntp_6 330 410 IPR003609 -
Seca4g05254 783 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 326 410 - -
Seca4g05254 783 PIRSF SRK 1 783 IPR024171 GO:0004674
Seca4g05254 783 Gene3D Transferase(Phosphotransferase) domain 1 605 783 - -
Seca4g05254 783 SUPERFAMILY Protein kinase-like (PK-like) 513 777 IPR011009 -
Seca4g05254 783 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 605 783 - -
Seca4g05254 783 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 6 137 - -
Seca4g05254 783 SMART blect_4 17 140 IPR001480 -
Seca4g05254 783 CDD B_lectin 17 140 IPR001480 -
Seca4g05254 783 Pfam Protein tyrosine and serine/threonine kinase 532 733 IPR001245 GO:0004672|GO:0006468
Seca4g05254 783 Gene3D Hepatocyte Growth Factor 326 408 - -
Seca4g05254 783 Pfam D-mannose binding lectin 59 166 IPR001480 -
Seca4g05254 783 Gene3D - 5 137 IPR036426 -
Seca4g05254 783 SMART serkin_6 529 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05254 783 ProSitePatterns Serine/Threonine protein kinases active-site signature. 650 662 IPR008271 GO:0004672|GO:0006468
Seca4g05254 783 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 783 - -
Seca4g05254 783 ProSitePatterns Protein kinases ATP-binding region signature. 535 557 IPR017441 GO:0005524
Seca4g05254 783 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 495 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05254 Seca-Chr4 98327460 98330866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05254 464 783 Receptor kinase-like Gene Family AT4G23140 53.988 1.08e-115 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05254 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05254 - - gmx:100776576 1055.05