Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05253 ATGGTGCATAACATGTTAATGTTATTTATTTGGTTCATATTATTCTCCTACATTTCAAGAAGTTCCACTGCGCTAGACACTTTAGCAGTGGGTCAATCAATCCAAGATGGGGAGACTTTAGTTTCAGCAAGTGGAGTTACTGAAGTGGGTTTCTTTAGCCCCGGAAATACAACACGTCGATACTTGGCTGTATGGTACAGGAATGTATCCCCTGCAACAGTGGTATGGGTGGCTAACCGAGAAACCCCTCTCTATTCTAACTCAGGAGTTTTAAAACTCAACGAAAAGGGGATTCTTCAGCTTTTCAATGGCACAAACAGAGCTATTTGGTCATCCAACGTACCACTCAATGCAGGAAATAATCCAATCGCTCAGCTCTTGGATTCGGGTAATTTTGTTGTAAAAAATAGACAGGAAACTGACAAGGACAATTTTTTATGGCAGAGTTTTGATTATCCCGGTGATACGTTGATGTCAGGAATGAAGCTTGGATGGAACTTGGAAACTGGTCTAGAAAGATTTCTGTCATCTTGGAAAAGTGCTGATGATCCTGCTAAGGGAGAATATACTATAAAACTTGATCTTAGAGGATATCCACAAGTAATTAAATTCAAGGGGTCTGATATAAAAATTAGAACAGGGCCATGGAATGGCCAATCTTTGGTTGGATATCCCGGTCCAAATGCTGAGTTGTCACAAGTATTTATGTTCAATGAAAAAGAAGTGTATTATGGGTGGGAGCTTCTTGATAAATCGATTTTCAGTGTGTATACACTGACCCCTTCAGGCCCTGGGCAGGGTTTCTTTTGGACAATTCAATCAAGCAGTAGACAAGTCTCCTCAACAGGGGAGGAAGATCAATGTGAAAATTATGCCTTTTGCGGTGCAAATTCTGTATGCAATATTGATGGTAACCATCCAACTTGTGAATGCTTGAAAGGATATATTCCCAAGTTTCCTCAACAATGGAGTATATCTTTTCGAGAAGGTTGTGTTCCAAGGAATAAATCTAATTGCACAAAGAGTTATACAGATGGCTTCTGGAAGCACACAAACATGAAATTGCCAGACACGTCTTCATCATCGTTTAATAAGACTATGAACCTTGAGGAATGTCAGAAGTCATGTCTGAAAATTTGTTCGTGTGTAGCATATGCAAATTTAGATATTCGTAATGGAGGAAGTGGGTGTCTACTCTGGTTTAACAATCTGGTTGATGTGAGGAAATTCTCTCAATGGGGACAAGATCTCTACGTCAGAGTCCCTGCTTCAGAACTAGATCGAGTTGCAGCACATACCCATCGAAACATCAAGAAGATAGTTCAAATCACAGTTGGTGTGATTATTTTTGGATTAATCACATCTGTATCCATATTGATAATTAAAAAACCAGTATCTTTCAACCAATCAGGGGCTGTTAGAAAAATTTATAACAAGCATTACAAATATAAACCGAGGAAGGAAGATGTTGATCTGCAAATATTTGACTTGTCAATCTTAGCTCATGCCACTGAAAACTTTTCAAGCAGTAACAAACTTGGAGAAGGTGGCTTTGGACCAGTATACAAGGGCTCACTGATAGATGGGCAAGAGATAGCTGTCAAAAGGCTTTCAAAGAAATCTGGACAAGGGTTGGAAGAATTCAAAAATGAAGTGGCATTGATTGCCAAACTTCAGCACCGTAATCTTGTAAAGCTTTTGGGTTGCTGCATTCAGGGAGAAGAAAAAATGTTGATCTATGAATACATGCCCAACAAAAGTTTGGACTACTTTGTTTTTGATGAAACCAAAAGAATATCCTTAGATTGGCTTAAGCGTTTCAACATTATTGGTGGCATTGCTCGAGGACTCCTTTATCTTCATCAAGACTCTAGGTTGAGGATCATTCATAGAGATCTAAAAACAAGTAATATATTACTAGATGGAAATTTAGATCCCAAAATATCAGACTTTGGCTTGGCTCGATCATTTTTGGGAGATCAAGTTGAGGCAAACACAAATAGGGTGGCTGGAACATATGGTTACATGCCTCCGGAATATGCTGTGCGTGGGCATTTCTCAGTGAAATCAGATGTCTTTAGTTATGGTGTGATAGTACTAGAAATTGTAAGCGGAAAAAAGAATAGAGAATTTTCAGACCCAGAACATTACCATAATCTTCTTGGATATGCATGGAGATTATGGACTGAAGAGAGAGCATTGGAAATTTTGGATGAAGCATTAAGCGAACAATGCACACCCTCTGAAGTTATACGATGCATACAAGTTGGCTTGTTATGTGTGCAACAAAGACCAGAAGACAGGCCAAACATGTCATCAGTGCTTCTAATGCTAAATGGGGAGAAATTGTTATCAAAGCCAAAGGTTCCTGGGTTTTACACAGAAAATGTTGTAACACCTGAATCAGATTCTTTGTCAGCAAATTGCAAACTTTGCTCAGCTAATGAAATGTCTATTACAGAGTTAGATGCAAGATAG 2478 0.3882 MVHNMLMLFIWFILFSYISRSSTALDTLAVGQSIQDGETLVSASGVTEVGFFSPGNTTRRYLAVWYRNVSPATVVWVANRETPLYSNSGVLKLNEKGILQLFNGTNRAIWSSNVPLNAGNNPIAQLLDSGNFVVKNRQETDKDNFLWQSFDYPGDTLMSGMKLGWNLETGLERFLSSWKSADDPAKGEYTIKLDLRGYPQVIKFKGSDIKIRTGPWNGQSLVGYPGPNAELSQVFMFNEKEVYYGWELLDKSIFSVYTLTPSGPGQGFFWTIQSSSRQVSSTGEEDQCENYAFCGANSVCNIDGNHPTCECLKGYIPKFPQQWSISFREGCVPRNKSNCTKSYTDGFWKHTNMKLPDTSSSSFNKTMNLEECQKSCLKICSCVAYANLDIRNGGSGCLLWFNNLVDVRKFSQWGQDLYVRVPASELDRVAAHTHRNIKKIVQITVGVIIFGLITSVSILIIKKPVSFNQSGAVRKIYNKHYKYKPRKEDVDLQIFDLSILAHATENFSSSNKLGEGGFGPVYKGSLIDGQEIAVKRLSKKSGQGLEEFKNEVALIAKLQHRNLVKLLGCCIQGEEKMLIYEYMPNKSLDYFVFDETKRISLDWLKRFNIIGGIARGLLYLHQDSRLRIIHRDLKTSNILLDGNLDPKISDFGLARSFLGDQVEANTNRVAGTYGYMPPEYAVRGHFSVKSDVFSYGVIVLEIVSGKKNREFSDPEHYHNLLGYAWRLWTEERALEILDEALSEQCTPSEVIRCIQVGLLCVQQRPEDRPNMSSVLLMLNGEKLLSKPKVPGFYTENVVTPESDSLSANCKLCSANEMSITELDAR. 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05253 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 338 421 - -
Seca4g05253 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Seca4g05253 825 SMART ntp_6 342 421 IPR003609 -
Seca4g05253 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 184 IPR036426 -
Seca4g05253 825 Pfam PAN-like domain 339 407 IPR003609 -
Seca4g05253 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 150 - -
Seca4g05253 825 Gene3D Hepatocyte Growth Factor 338 418 - -
Seca4g05253 825 PIRSF SRK 1 825 IPR024171 GO:0004674
Seca4g05253 825 ProSiteProfiles PAN/Apple domain profile. 339 422 IPR003609 -
Seca4g05253 825 CDD STKc_IRAK 513 780 - -
Seca4g05253 825 CDD PAN_AP_plant 336 422 - -
Seca4g05253 825 Gene3D Phosphorylase Kinase; domain 1 480 582 - -
Seca4g05253 825 FunFam - 583 787 - -
Seca4g05253 825 Pfam S-locus glycoprotein domain 212 318 IPR000858 GO:0048544
Seca4g05253 825 ProSiteProfiles Bulb-type lectin domain profile. 25 147 IPR001480 -
Seca4g05253 825 Pfam Protein tyrosine and serine/threonine kinase 510 775 IPR001245 GO:0004672|GO:0006468
Seca4g05253 825 Pfam D-mannose binding lectin 73 179 IPR001480 -
Seca4g05253 825 Gene3D - 19 150 IPR036426 -
Seca4g05253 825 SUPERFAMILY Protein kinase-like (PK-like) 492 778 IPR011009 -
Seca4g05253 825 ProSiteProfiles Protein kinase domain profile. 507 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05253 825 SMART serkin_6 507 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05253 825 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 7 765 - -
Seca4g05253 825 CDD B_lectin 32 153 IPR001480 -
Seca4g05253 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 472 582 - -
Seca4g05253 825 ProSiteProfiles EGF-like domain profile. 284 321 IPR000742 -
Seca4g05253 825 Gene3D Transferase(Phosphotransferase) domain 1 583 788 - -
Seca4g05253 825 SMART blect_4 31 153 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05253 Seca-Chr4 98282339 98285866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05253 495 825 Receptor kinase-like Gene Family AT4G23140 55.556 1.05e-126 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05253 PK_Tyr_Ser-Thr 3.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05253 - - gmx:100776576 1263.06