Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05252 ATGAATCAATATATCCGTGATGGTGAAACTTTAATTTCAGCAAATGGAATTATTGAAGTAGTGGTATGGGTGGCCAACCGTGAAACACCTCTCCAGAATAACTCAGGAGTTTTAGAACTCAATGAAAATGGTGTTCTTCTGCTTCTCAATGCAACGAACAGCACTATTTGGTCATCCAATGTTTCAAGCAAAGCAGAGAATAATCCAATTGCTCAGATCTTGGATTCAGGAAATTTTGTAGTGAAGAATGGACAGGAAACAGAGAAGGACAAGTATTTGTGGCAGAGTTTTGATTATTCCTGTGATACTTTGATATCAGGAATGAAGCTTGGATGGGACTTGGAAACTGGTCTAGAAAGATATTTGTCATCTTGGAAAAGTGCTGATGATCCTGCTAAGGGAGAATATACTGCAAAAGTTGACCTTAGAGGATACCCCCAAGTTATTAAATTCAAGGGTTCTGAGATTAAAATTAGATCAGGGCCATGGAATGGCCAGACTTTGGTTGGATATCCAGGTCCCAGTCCAACTCCTAATATGTCACAAATATTTGTGTTCAACGAAAAAGAAGTGTATTATGGGTGGGAGCTTAATGATACATCGATTTTCAATGGATATACACTGACCCCTTCAGGCACTGGACAGAGTTTATTTTGGACAATTCAATCAAGTAGCCAGCAAGTCATTGTCTCAATTGGAGAGGATGATCAGTGCGAAAATTATGCCTTCTGCGGTGCAAATTCTGTATGCAATATTGATGGTAACCATCCAACTTGTGAATGCTTGAAAGGATATGTTCCCAAGTTTCCTCAACAATGGAATATGTCATTTTGGCCTAACGGATGTGTTCCAAAGAATAAATCTAGTTGTAAAAACAGTTACACTGATGGTTTCTTGAAATACACACACATGAAATTGCCAGATACTTCTTCATCATGGTTTAATAAGACCATGAACCTTGAGGAATGTCGCAAGTCATGTCTGAAAAATTGTTCATGTGTAGCTTATGCAAATTTAGATGTCCGTAATGGAGGAAATGGATGTCTTCTTTGGTTTAAGAATCTGGTTGATGTGAGAAAATTCTCTCAATGGGGACAAGATCTTTATGTCAGAGTCCCTGCTTCAGAACTAGATCAAGTTGCAGTAGATGGCCATAGAAACACCAAGAAAAAGATAGTAGGAATCACAATTGGTGTGATTATTTTCGGTTTAGCCACATGTGGAATGCAAGAAAAATTTACAGCAAGCATTACAGAAAAAAAACCAAGGAAGGAAGACGTTGATATGGCAACATTTGATTTGTCGGTTATAGCTAATGCCACTAAAAACTTTTCAAGTGGTAACAAACTCGGAGAAGGTGGCTTTGGACCAGTATATAAGGGCACACTAATAGAAGGGCTAGAGATAGCTGTTAAAAGGCTTTCACACAAGTCTGGACAAGGGTTGGAAGAATTCAAAAATGAAGTTGCATTAATTGCCAAACTTCAACATGGTAATCTTGTGAAGCTTCTTGGTTGTTGTATACAAGGAGAAGAAAAAATGTTGATCTATGAATACATGCCCAACAAAAGCTTGGACTACTTTATTTTTGACTTTGGCTTGGCTCGAACATTTTTGGGAGATCAAGTTGAGGCAAACACAAATAGGGTAGCTGGAACATACGGTTACATGCCTCCAGAGTATGCTGTGCGTGGGAATTTCTCGGTCAAATCAGATGTTTTTAGTTGTGGTGTGATAGTATTAGAGATTGTAAGTGGGAAGAAAAATAGGGAATTTTTAGACCCCAAACACAACCATAATCTTCTTGGATATTTGTACGATGCATACATATTGGCTTGTTATGAGTTCAACAAAGACCAGAAGATAGCCAGACATGTCGTCGGTGGTTCTAATGCTAAATGGTGA 1905 0.3837 MNQYIRDGETLISANGIIEVVVWVANRETPLQNNSGVLELNENGVLLLLNATNSTIWSSNVSSKAENNPIAQILDSGNFVVKNGQETEKDKYLWQSFDYSCDTLISGMKLGWDLETGLERYLSSWKSADDPAKGEYTAKVDLRGYPQVIKFKGSEIKIRSGPWNGQTLVGYPGPSPTPNMSQIFVFNEKEVYYGWELNDTSIFNGYTLTPSGTGQSLFWTIQSSSQQVIVSIGEDDQCENYAFCGANSVCNIDGNHPTCECLKGYVPKFPQQWNMSFWPNGCVPKNKSSCKNSYTDGFLKYTHMKLPDTSSSWFNKTMNLEECRKSCLKNCSCVAYANLDVRNGGNGCLLWFKNLVDVRKFSQWGQDLYVRVPASELDQVAVDGHRNTKKKIVGITIGVIIFGLATCGMQEKFTASITEKKPRKEDVDMATFDLSVIANATKNFSSGNKLGEGGFGPVYKGTLIEGLEIAVKRLSHKSGQGLEEFKNEVALIAKLQHGNLVKLLGCCIQGEEKMLIYEYMPNKSLDYFIFDFGLARTFLGDQVEANTNRVAGTYGYMPPEYAVRGNFSVKSDVFSCGVIVLEIVSGKKNREFLDPKHNHNLLGYLYDAYILACYEFNKDQKIARHVVGGSNAKW. 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05252 634 Pfam S-locus glycoprotein domain 159 269 IPR000858 GO:0048544
Seca4g05252 634 SUPERFAMILY alpha-D-mannose-specific plant lectins 20 131 IPR036426 -
Seca4g05252 634 Gene3D Hepatocyte Growth Factor 290 369 - -
Seca4g05252 634 ProSiteProfiles PAN/Apple domain profile. 290 373 IPR003609 -
Seca4g05252 634 SMART ntp_6 293 372 IPR003609 -
Seca4g05252 634 ProSiteProfiles EGF-like domain profile. 234 271 IPR000742 -
Seca4g05252 634 Pfam D-mannose binding lectin 21 126 IPR001480 -
Seca4g05252 634 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 289 372 - -
Seca4g05252 634 SUPERFAMILY Protein kinase-like (PK-like) 431 594 IPR011009 -
Seca4g05252 634 Pfam Protein tyrosine and serine/threonine kinase 446 529 IPR001245 GO:0004672|GO:0006468
Seca4g05252 634 Gene3D Phosphorylase Kinase; domain 1 418 515 - -
Seca4g05252 634 CDD PAN_AP_plant 287 373 - -
Seca4g05252 634 ProSiteProfiles Protein kinase domain profile. 444 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05252 634 Gene3D - 1 97 IPR036426 -
Seca4g05252 634 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 409 519 - -
Seca4g05252 634 CDD B_lectin 11 99 IPR001480 -
Seca4g05252 634 ProSiteProfiles Bulb-type lectin domain profile. 1 94 IPR001480 -
Seca4g05252 634 Pfam PAN-like domain 290 358 IPR003609 -
Seca4g05252 634 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 18 604 - -
Seca4g05252 634 SMART blect_4 2 100 IPR001480 -
Seca4g05252 634 Gene3D Transferase(Phosphotransferase) domain 1 516 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05252 Seca-Chr4 98244103 98247792 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05252 387 604 Receptor kinase-like Gene Family AT4G23230 40.714 6.51e-54 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05252 S_locus_glycop 9.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05252 - - gmx:100776576 828.165