Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05250 ATGTTTCTAGGTAATGATCAACAGGGTGTACTAGCAAATGGGACAGAGATTGCTGTCAAGCGGCTTTCCATGAAATCTGGACAAGGACCACAGGAGTTCAAGAATGAAGTGCTGTTGATTGCCAATCTTCAGCATCGAAATCTGGTGAAACTTCTCGGTTGTTGCATTCAGAATGATGAAAGAATCCTAATCTATGAATACATGCCTAACAGAAGTTTGGACAACTTCATTTTTGATCAAACAAGAAACAAAGTATTGGATTGGAGTACACGCTTACATATTGTAAGTGGGATTGCTCGAGGGCTTCTCTATCTCCATCAAGATTCTAGACTAAGGATCATCCACAGAGATCTAAAAACCAGTAACATTCTTCTTGATAATGATATGAACCCAAAAATATCAGACTTTGGTCTGGCCAGGGTTTTTGGTGGTGATCATGCTGAGGCCAATACAATAAGAGTAGTGGGAACATATGGTTACATGCCCCCTGAGTATGCAGTGTATGGTTCTTTTTCAGTGAAGTCTGATGTGTTTAGCTTTGGTGTTATTGTACTGGAGATGGTTAGTGGCAGAAAGAACAGAGAATTTTCTGACCCACAACATAGTCTTAACCTTCTTGGACATGCATGGAGACTGTGGAGTGAGGATAGACCATTGGAGCTGATAGATGATTCCCTTAGTGATTCAGTTATTTTGGCTGAGGCATTAAGATGTATTCACATAGGGCTCCTGTGTGTGCAAGAGAGACCAGATGATAGGCCAGACATGTCATCTGTTGTTCTAATGTTGAATGGTGAGAAACCATTGCCTAATCCAAGGCAGCCTGGGTTTTATCCACATGAAGTTGTCTCTTCCTCAAGCAAACAAGAACTATCTTCAACAAATGAACTTTCCATTTCATTGTTACAGGCAAGATAG 918 0.4074 MFLGNDQQGVLANGTEIAVKRLSMKSGQGPQEFKNEVLLIANLQHRNLVKLLGCCIQNDERILIYEYMPNRSLDNFIFDQTRNKVLDWSTRLHIVSGIARGLLYLHQDSRLRIIHRDLKTSNILLDNDMNPKISDFGLARVFGGDHAEANTIRVVGTYGYMPPEYAVYGSFSVKSDVFSFGVIVLEMVSGRKNREFSDPQHSLNLLGHAWRLWSEDRPLELIDDSLSDSVILAEALRCIHIGLLCVQERPDDRPDMSSVVLMLNGEKPLPNPRQPGFYPHEVVSSSSKQELSSTNELSISLLQAR. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05250 305 Gene3D Transferase(Phosphotransferase) domain 1 68 269 - -
Seca4g05250 305 ProSiteProfiles Protein kinase domain profile. 1 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05250 305 SUPERFAMILY Protein kinase-like (PK-like) 12 286 IPR011009 -
Seca4g05250 305 Gene3D Phosphorylase Kinase; domain 1 2 67 - -
Seca4g05250 305 PIRSF ILK 8 217 - -
Seca4g05250 305 PIRSF ILK 231 265 - -
Seca4g05250 305 CDD STKc_IRAK 9 265 - -
Seca4g05250 305 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 68 271 - -
Seca4g05250 305 FunFam Cysteine-rich receptor-like protein kinase 11 3 67 - -
Seca4g05250 305 SMART serkin_6 2 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05250 305 Pfam Protein tyrosine and serine/threonine kinase 13 260 IPR001245 GO:0004672|GO:0006468
Seca4g05250 305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 113 125 IPR008271 GO:0004672|GO:0006468
Seca4g05250 305 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05250 Seca-Chr4 98209053 98210698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05250 3 277 Receptor kinase-like Gene Family AT4G23230 59.783 2.48e-120 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05250 PK_Tyr_Ser-Thr 2.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05250 - - gmx:106794307 461.84