Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05248 ATGAGGCTTCAAAGCAACACTTTAAGTGGTCAACATACATCTCTAACATCTTGGAGAAACACAGAGGATCCTGCTATGGGGGATTTTTCATACTATATAGATACTCATGGTCATGGTCTTCCCCAAGTGGTTATTACAAAGGGAGGGACTTTATTGTTCAGAGCAGGTTCATGGAATGGCTATCTTTTAACTGGGATTGCATCAGAAACACTCTATAAATATTTCAATTTAAGTTTTGAGCTAACTGGGAAGGAAGTTTCTTATGGATATGAACTCTTAAACAGTTCTATTATTTCAAGATACATGCTCACTCCAACAGGTATTGTGCAACGTTTTACATGGTCAAATCAGACACAAAATTGGCAGCTTTTCCTAGCTGGTCCTATAGACCAGTGTGACAATTATGCCATTTGCGGTAAACATGCTAATTGTGATGTTAATAATTCTCCAATATGTGAATGCCTGGAGGGTTTCAAGCCCAAATCTCAAGAAAAATGGAATTCACTGGATTGGTCTGGTGGGTGTGTTAGGAGAGTAAATTTGGATTGTGATCACAGAGATGTGTTTCTGAAATATACAGGAATGAAGTTGCCAAACACTTCCTACTCCTGGTTTGATATGAACATGAACCTTCAGCAATGTGCGAATTTATGCTTGAAAAACTGCTCTTGCACAGCATATGCAAATTTATATATCAGAAATGGTGGGAGTGGTTGCTTGATTTGGTTTAATGACATTGTGGACATGAGAAAGCTACCTTCTGGAGGACAAGACCTTTATGTAAAAGTGGCAGCTTCAGAACTAGATTTTAATCTCTCAGATCATAATGAGAACAACAAGCATTTCAACAAGAAACTCTTAGGAGGAATTCTAGCAGGCTCCATTCTTTTCATCTTGGTCATGACAGTTATTGGAGTGGCCATACTACGAAGAATAAAACTCAAGAACAGCACAACAAAAATTTGGAGTCACCCTGATATGAAAGAAAAAGAAGACATTGACATACCAATATTTGATTTTTCAACCATAGCCAATGCTACTAATCACTTCTCTATCAATAATAAATTGGGAGAAGGTGGATTTGGTCCAGTTTACAAGGGTACACTTACAAATTACCAAGATATAGCAGTGAAGAGGCTTAGCAATAATTCAGGTCAAGGACCAGAAGAGTTCATAAATGAAGTTATGTTAATTGCGAATCTTCAGCACCGAAATCTTGTGAAACTTCTTGGGTGTTGCATTCAGGATAATGAGAGACTTTTGATTTATGAATTCATGCCCAATAGAAGCTTGGACTACTTTATTTTTGATAAAACTAAAAGTAGTTCACTACATTGGGCTCAGCGCCTCCAAATTATTGGTGGGATTGCTAGAGGACTTCTCTATCTTCATGAAGATTCAAGACTAAGGATTGTTCATAGAGATCTCAAGACCAGTAATATTCTTCTTGATGAAAATATGAATCCAAAAATATCAGACTTTGGTCTTGCTAGAATATTTGGGGGAGATGAAACCGAATACAAAACAAAGAGAGTAGTGGGAACTTATGGCTATATTTCTCCCGAGTTTGCAGTCCGTGGATTTTTCTCAGTGAAATCGGATGTTTTTAGCTTTGGTGTTATTATGCTAGAGATAATTAGTGGAAAGAAGAACAGCGAATTTTTTGACAATCATAATCTTGACCTTCTCTGCCATGCATGGAGACTGTGGTGTGAAGAGAAGCCATTGGAGCTGATAGATACATCATTAGGCGATTCTATGGCTCTACAAGAAGTGTTAAGATGTATTCACATCGGGCTCTTATGTGTACAAGAGAGAACAGAGGATAGGCCAGACATGTCAGTTGTAGTCTTAATGTTGAATGGTGAGAAACCATTGCCTAGACCAAAGGAGCCCGCGTTTTATCCACACCAGTTTGGTTCTTCTACGGGCTATTATGGTCTGCGCTCAACCAATGAAATTTCTGTTAGCCTGTTAGATGCAAGATAG 1989 0.3816 MRLQSNTLSGQHTSLTSWRNTEDPAMGDFSYYIDTHGHGLPQVVITKGGTLLFRAGSWNGYLLTGIASETLYKYFNLSFELTGKEVSYGYELLNSSIISRYMLTPTGIVQRFTWSNQTQNWQLFLAGPIDQCDNYAICGKHANCDVNNSPICECLEGFKPKSQEKWNSLDWSGGCVRRVNLDCDHRDVFLKYTGMKLPNTSYSWFDMNMNLQQCANLCLKNCSCTAYANLYIRNGGSGCLIWFNDIVDMRKLPSGGQDLYVKVAASELDFNLSDHNENNKHFNKKLLGGILAGSILFILVMTVIGVAILRRIKLKNSTTKIWSHPDMKEKEDIDIPIFDFSTIANATNHFSINNKLGEGGFGPVYKGTLTNYQDIAVKRLSNNSGQGPEEFINEVMLIANLQHRNLVKLLGCCIQDNERLLIYEFMPNRSLDYFIFDKTKSSSLHWAQRLQIIGGIARGLLYLHEDSRLRIVHRDLKTSNILLDENMNPKISDFGLARIFGGDETEYKTKRVVGTYGYISPEFAVRGFFSVKSDVFSFGVIMLEIISGKKNSEFFDNHNLDLLCHAWRLWCEEKPLELIDTSLGDSMALQEVLRCIHIGLLCVQERTEDRPDMSVVVLMLNGEKPLPRPKEPAFYPHQFGSSTGYYGLRSTNEISVSLLDAR. 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05248 662 Pfam PAN-like domain 183 249 IPR003609 -
Seca4g05248 662 SUPERFAMILY Protein kinase-like (PK-like) 334 620 IPR011009 -
Seca4g05248 662 SMART serkin_6 350 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05248 662 Pfam S-locus glycoprotein domain 53 162 IPR000858 GO:0048544
Seca4g05248 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Seca4g05248 662 ProSiteProfiles Protein kinase domain profile. 350 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05248 662 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 426 627 - -
Seca4g05248 662 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 109 641 - -
Seca4g05248 662 Gene3D Transferase(Phosphotransferase) domain 1 426 626 - -
Seca4g05248 662 ProSiteProfiles PAN/Apple domain profile. 183 264 IPR003609 -
Seca4g05248 662 CDD STKc_IRAK 356 622 - -
Seca4g05248 662 CDD PAN_AP_plant 179 264 - -
Seca4g05248 662 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 182 263 - -
Seca4g05248 662 Gene3D Phosphorylase Kinase; domain 1 324 425 - -
Seca4g05248 662 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 314 425 - -
Seca4g05248 662 Pfam Protein tyrosine and serine/threonine kinase 351 567 IPR001245 GO:0004672|GO:0006468
Seca4g05248 662 SMART ntp_6 184 263 IPR003609 -
Seca4g05248 662 Gene3D Hepatocyte Growth Factor 180 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05248 Seca-Chr4 98178015 98181468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05248 276 637 Receptor kinase-like Gene Family AT4G23190 52.589 9.09e-130 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05248 PK_Tyr_Ser-Thr 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05248 - - ccaj:109805721 981.089