Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05246 ATGGAGAGCTTCAAAAGGCTGGGTCTTTACTCTCTGTTTCTCTCCTTGATGATAAGCATGTCCTCCACATTGGACATGATTACTCCAACCCAACCCATCCGAGATGGTAAGAGTGAAAAAAACGAAACTTTGGTTTCAACAAATGGAACCTTCGAAGCAGGATTCTTCAGCCTTGAAAATTCAGAAACCCGTTACTTTGGTGTTTGGTACAAAAATATTTCTCCCAGAACAGTTGTATGGGTAGCCAACAGAGAAGCACCACTCAATGACCGCTCAGGAGTTCTGGAAGTAGACAGTGAAGGAATTCTGAGAATTATGGATGGTACAGGAACCAAAATCTGGTCCACAAACGCATCAAAAACAGGGGAGAAGCCCATTGTGGTGAAGCTGTTGGAAACAGGAAACATGGTTGTGCAAAATGGAAATAACTTGGATGGCCTTTTGTGGCAGAGCTTTGATTATCCTGGTGACACTTTACTCCCAGGAATGAAAATTGGAAGAAACTCAAAAACAGGTCAAATTTGGGCTTTGAGATCTTGGAAATCTTTGCAAGATCCTACTCCAGGTGAATTTTCATTTAACATTGATATTCATGGACTTCCTCAATTAGTTATTACAAAAGAGGGTGATACACTTTACAGACCAGGGTCATGGAATGGGCTCAGTATTACAGGACTCCCAGATCAAATCACTGACCAATTTGTCAAACCTCTTTTCGTGACAAATAAAGAGGGAGAAGTCTTCTATGGGATTGAACTCCAAAATAGCTCAACTATCATGAGAAGCAGACTGGTTCCACAAGGCTATCAAGTACATTTAATTTGGTCACATCAAACACAACAATGGGAAGTGAAATACCCTGGTCCGTTTGATCAGTGTGAGAGATACTCCATGTGTGGTGCAAATACTAATTGTGATGCTGATGGGAATGAGCACTGTGAATGCTTGATAGGATTCAAAGTCATCTCTACAGATTCAGCAGGTAAGCTTAGCGGGTGTGTTCGAACCACTCCACTAGACTGTAATAAGGGAGATAATTTTCACAAGTATGAGGGAATGAAATTGCCAGACACATCTTCATCTTGGTATGATAAGACCATTAGTCTACAGGAATGTGAGAAATTATGTTTGAGAAACTGCTCTTGTACTGCATATGCTAAATTGAATATCAGTGGCATGGGAAGTGGCTGTTTGCATTGGTTTACCAACATTGTTGACATGAGGAAACTCCCTCAGGGAGGGCAAGATTTTTATTTACGAGTTAGTCCAGCTTCAGAGCAAGATCACCGCTTCAAAGGGAAGAAACTAGCTGGAATTGTGGTGGGCTGTACTATATTCGTGATTGCCATTATAGTATTTGGATTGATTTTATGCATTAGGAGGAAGAAACTCATGCAGCCAGGAAACGGGAGTGAGAAGGATGACATTGATTTAGCAACATTTGATTTTTTAACCATTTCTAATGCCACAAATCACTTTTCACAAAGTAACAAATTAGGACAAGGTGGCTTTGGATCCGTGTACAAGGGAGTATTACCAAATGGGCAAGAGATTGCAGTTAAGAGGCTCTCTAAAACTTCTGGACAAGGTTTGGAAGAGTTCAAAAATGAAGTCACGTTGATTGCAAAACTTCAACACCGCAATCTTGTAAAGCTTCTTGGTTGTTCTATTCAACAAGAGGAGAAATTGTTGATTTATGAATTCATGCCCAATAGAAGTTTGGACTACTTTATTTTTGATTCAATAAAACATAAATTATTAAGTTGGACTAAAAGATTCGAAATTATTGGTGGAATTGCTCGGGGGCTTTTGTATCTTCATCAAGACTCTAGATTAAAGATCATTCATAGAGATCTAAAAACTAGTAATGTTCTTCTTGACAATAATATGAACCCAAAAATATCAGATTTTGGTATGGCCAGAATTTTTGGACTAGATCAAGATGAAGCAAATACGAACAGAGTAATGGGCACATAG 1977 0.392 MESFKRLGLYSLFLSLMISMSSTLDMITPTQPIRDGKSEKNETLVSTNGTFEAGFFSLENSETRYFGVWYKNISPRTVVWVANREAPLNDRSGVLEVDSEGILRIMDGTGTKIWSTNASKTGEKPIVVKLLETGNMVVQNGNNLDGLLWQSFDYPGDTLLPGMKIGRNSKTGQIWALRSWKSLQDPTPGEFSFNIDIHGLPQLVITKEGDTLYRPGSWNGLSITGLPDQITDQFVKPLFVTNKEGEVFYGIELQNSSTIMRSRLVPQGYQVHLIWSHQTQQWEVKYPGPFDQCERYSMCGANTNCDADGNEHCECLIGFKVISTDSAGKLSGCVRTTPLDCNKGDNFHKYEGMKLPDTSSSWYDKTISLQECEKLCLRNCSCTAYAKLNISGMGSGCLHWFTNIVDMRKLPQGGQDFYLRVSPASEQDHRFKGKKLAGIVVGCTIFVIAIIVFGLILCIRRKKLMQPGNGSEKDDIDLATFDFLTISNATNHFSQSNKLGQGGFGSVYKGVLPNGQEIAVKRLSKTSGQGLEEFKNEVTLIAKLQHRNLVKLLGCSIQQEEKLLIYEFMPNRSLDYFIFDSIKHKLLSWTKRFEIIGGIARGLLYLHQDSRLKIIHRDLKTSNVLLDNNMNPKISDFGMARIFGLDQDEANTNRVMGT. 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05246 658 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 569 658 - -
Seca4g05246 658 ProSitePatterns Protein kinases ATP-binding region signature. 499 521 IPR017441 GO:0005524
Seca4g05246 658 CDD PAN_AP_plant 337 422 - -
Seca4g05246 658 ProSiteProfiles PAN/Apple domain profile. 341 422 IPR003609 -
Seca4g05246 658 ProSiteProfiles Zinc finger SWIM-type profile. 365 408 IPR007527 GO:0008270
Seca4g05246 658 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 152 - -
Seca4g05246 658 Pfam PAN-like domain 341 407 IPR003609 -
Seca4g05246 658 Pfam D-mannose binding lectin 77 181 IPR001480 -
Seca4g05246 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672|GO:0006468
Seca4g05246 658 Pfam Protein kinase domain 494 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05246 658 Gene3D - 21 152 IPR036426 -
Seca4g05246 658 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 652 - -
Seca4g05246 658 Gene3D Hepatocyte Growth Factor 338 419 - -
Seca4g05246 658 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 459 568 - -
Seca4g05246 658 Pfam S-locus glycoprotein domain 213 320 IPR000858 GO:0048544
Seca4g05246 658 SMART ntp_6 342 421 IPR003609 -
Seca4g05246 658 SMART blect_4 35 155 IPR001480 -
Seca4g05246 658 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 186 IPR036426 -
Seca4g05246 658 CDD B_lectin 41 155 IPR001480 -
Seca4g05246 658 ProSiteProfiles Bulb-type lectin domain profile. 24 151 IPR001480 -
Seca4g05246 658 Gene3D Transferase(Phosphotransferase) domain 1 569 658 - -
Seca4g05246 658 ProSiteProfiles Protein kinase domain profile. 493 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05246 658 Gene3D Phosphorylase Kinase; domain 1 469 568 - -
Seca4g05246 658 SUPERFAMILY Protein kinase-like (PK-like) 478 658 IPR011009 -
Seca4g05246 658 SMART serkin_6 493 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05246 Seca-Chr4 98052477 98056359 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05246 447 658 Receptor kinase-like Gene Family AT4G23130 63.889 2.79e-87 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05246 Pkinase 8.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05246 - - gmx:100802416 932.939