Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05241 ATGGCCATTCTTTCTGTCATGTTTCTTGCTACCAACCTACTTTTCTTCTTCTCTAAAAATTCGGCTGCAACAGATACCATTGTCCAATCTCAATCACTTTCCGATGGCATGACGTTGGTTTCAAATGATGGAACCTTTGAGTTGGGTTTCTTCAGCCCAGGTAATTCCACAAACCGCTATGTAGGAATCTGGTACAAAAACATACCAGTTAGAACTGTCGTTTGGGTTGCCAACCGAGACAAACCAATCAAATCCAACTCCAGCAAGTTGATCATAACTACAGAGGGAAACCTCGAACTTCTCAACCAGAACAACACAGTTATTTGGTCAACAAACACAACAACCAATTCATTGAATAACGTAGCACAACTCTTAGACTCTGGCAACTTGGTCATAAGAGATGAGAAAGACAACAATCCTGAAAACTACTTGTGGCAGAGCTTTGACTACCCTTCAGACACATTTTTACCAGGAATGAAAGTGGGTTGGGACTTCAAGACAGGCCTTAATAAACGTCTAACTGCTTGGAAAAATTGGGATGACCCTTCCCCTGGTGACTTTACATGGAGTATGGTACCTACCAACAATCCTGAAGCAGTTATGTGGAAGGGCTCAGAAGAGTACTACAGAAGTGGCCCTTCAGATGGCACTAAATTTAGTGGTGACCCATCTTTGCAGTACAATTCACTAGTCAACTACACGTTTGTGTCCAATAAGGATGAATTGTATTTTTCATATAGCATCAATGATAAGTCAGTAATTTCAAGAATTGTCATGAATCAAACAATTTATGCTCGTCAGCGCTTGACATGGAGCAGAGATACTCAAACGTGGAGGATGTCTTCAACATTGCCAAGTGATTACTGTGATAACTATAATCTTTGTGGTCCGTTTGGGATTTGTGTCATTGGTGAGGCCCCTGTTTGCAAGTGTTTAAATGGATTTAAGCCAAAATCGCCCCAAAGATGGAATGAAATGGATTGGAATCAAGGATGTGTGCACGGCCAAAGTTGGAGCTGCAGGGATAAGAATAAGGATGGTTTCCTCAAATTCAGTAACATGAAGGTCCCAGACACTAAAAAATCATGGGTTAATGGAAGTATGACACTTGTGGAATGCAAGGCCAAATGTTGGGAAAATTGTAACTGTACAGCTTTTGCAAATTCAGACATCAGAGGAGAAGGTAGTGGTTGTGCCATTTGGTTCGATGATCTGTTAGATTTGAGACAGATGGCGAATGCAGGGCAAGATCTGTATATAAGATTGGCTGTGTCAGATATAGAAGAAAATCAAGATGCAAAAGATGATTCAAAGAGAAAGGTGGTTGTGATCATAACAAGCACTGTTTCATCAATCGTCTTGGTGCTTTTAATTTTCATTTTCATTTTCATGTATAGGAGGAGGAAAACAAAAACTATAGTGAAAACAGAGATTGTAACAAGAAGGAAAGAAAAGAACAATGAAAGCAAACGAGAAGACTTTGAGCTACCTTTTTTCGACCTTGCTTCAATAGCATGTGCTACAGATCACTTCTCAAATCACAATAAGCTTGGCCAAGGTGGTTTTGGTCCGGTATACAAGGGAACACTACCAGATGGACAGGAGATTGCTGTCAAAAGACTTTCACAAACATCTAAACAAGGATTAAAAGAATTTAAGAATGAGGTTTTGTTATGTGCTAGGCTTCAACACAGAAATCTTGTTAAAGTTCTTGGTTGTTGCATTGAAGAAGATGAGAAATTGCTTATTTATGAATTCATGGCCAACAAAAGCCTAGATTTCTTTCTTTTCGATTCAGCTCGAAGCAAATTTTTGGACTGGCCTACACGTTTCCACATTATAAATGGAATTGCTCGAGGACTACTTTATCTTCACCAAGATTCAAGACTAAGGATCATACATAGAGATCTTAAGGCAAGTAATGTTTTATTAGACAAGGAGATGAATCCAAAAATTTCAGATTTTGGCTTGGCAAGAATGTGTGGAGATGATCAAATTGGAGGAAATACAAGCAAAGTTGTTGGTACATATGGTTACATGGCACCTGAATATGCTTTTGACGGAATATTCTCAATCAAATCTGATGTGTTTAGCTTTGGCATATTACTGCTAGAGATAGTAAGTGGCAAGAAAAATAGCAGACTTTTCTTTCCAAGCGACTACAATAATCTTATTGGACATGCATGGAAGTTGTGGAAAGAGGGCATTCCAATGCAACTGATTGATGTTAGTTTGGAGGACTCATATATTCTATCTGAAGCCTTACGATGCATTCATATTGGCCTTTTATGTGTGCAACATCATCCTAATGATAGGCCAAACATGGCATCTATTGTTGCATTGTTAAGCGGAGATAGTACATTGCCTTTGCCGAAGGAGCCTAACTTCTTAATAGAAAATGTCTCAACAGAAGGGGATTCTTATTCAAAAAACCAAATGGATGTTTCAATTAATGATGTCACTATCTCATTGTTGAATGAAAGATAG 2487 0.3872 MAILSVMFLATNLLFFFSKNSAATDTIVQSQSLSDGMTLVSNDGTFELGFFSPGNSTNRYVGIWYKNIPVRTVVWVANRDKPIKSNSSKLIITTEGNLELLNQNNTVIWSTNTTTNSLNNVAQLLDSGNLVIRDEKDNNPENYLWQSFDYPSDTFLPGMKVGWDFKTGLNKRLTAWKNWDDPSPGDFTWSMVPTNNPEAVMWKGSEEYYRSGPSDGTKFSGDPSLQYNSLVNYTFVSNKDELYFSYSINDKSVISRIVMNQTIYARQRLTWSRDTQTWRMSSTLPSDYCDNYNLCGPFGICVIGEAPVCKCLNGFKPKSPQRWNEMDWNQGCVHGQSWSCRDKNKDGFLKFSNMKVPDTKKSWVNGSMTLVECKAKCWENCNCTAFANSDIRGEGSGCAIWFDDLLDLRQMANAGQDLYIRLAVSDIEENQDAKDDSKRKVVVIITSTVSSIVLVLLIFIFIFMYRRRKTKTIVKTEIVTRRKEKNNESKREDFELPFFDLASIACATDHFSNHNKLGQGGFGPVYKGTLPDGQEIAVKRLSQTSKQGLKEFKNEVLLCARLQHRNLVKVLGCCIEEDEKLLIYEFMANKSLDFFLFDSARSKFLDWPTRFHIINGIARGLLYLHQDSRLRIIHRDLKASNVLLDKEMNPKISDFGLARMCGDDQIGGNTSKVVGTYGYMAPEYAFDGIFSIKSDVFSFGILLLEIVSGKKNSRLFFPSDYNNLIGHAWKLWKEGIPMQLIDVSLEDSYILSEALRCIHIGLLCVQHHPNDRPNMASIVALLSGDSTLPLPKEPNFLIENVSTEGDSYSKNQMDVSINDVTISLLNER. 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05241 828 Pfam Domain of unknown function (DUF3403) 785 825 IPR021820 GO:0004674
Seca4g05241 828 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 182 IPR036426 -
Seca4g05241 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 148 - -
Seca4g05241 828 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Seca4g05241 828 ProSiteProfiles Protein kinase domain profile. 511 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05241 828 CDD B_lectin 30 151 IPR001480 -
Seca4g05241 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 339 422 - -
Seca4g05241 828 Gene3D Phosphorylase Kinase; domain 1 471 586 - -
Seca4g05241 828 ProSiteProfiles PAN/Apple domain profile. 340 423 IPR003609 -
Seca4g05241 828 Pfam PAN-like domain 340 408 IPR003609 -
Seca4g05241 828 Pfam D-mannose binding lectin 72 177 IPR001480 -
Seca4g05241 828 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 773 - -
Seca4g05241 828 Gene3D Transferase(Phosphotransferase) domain 1 587 788 - -
Seca4g05241 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 475 586 - -
Seca4g05241 828 CDD PAN_AP_plant 339 423 - -
Seca4g05241 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672|GO:0006468
Seca4g05241 828 PIRSF SRK 1 828 IPR024171 GO:0004674
Seca4g05241 828 Pfam Protein tyrosine and serine/threonine kinase 514 781 IPR001245 GO:0004672|GO:0006468
Seca4g05241 828 CDD STKc_IRAK 517 782 - -
Seca4g05241 828 ProSiteProfiles EGF-like domain profile. 285 321 IPR000742 -
Seca4g05241 828 Gene3D - 18 148 IPR036426 -
Seca4g05241 828 SUPERFAMILY Protein kinase-like (PK-like) 494 794 IPR011009 -
Seca4g05241 828 SMART blect_4 30 151 IPR001480 -
Seca4g05241 828 Pfam S-locus glycoprotein domain 209 319 IPR000858 GO:0048544
Seca4g05241 828 SMART serkin_6 511 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05241 828 SMART ntp_6 343 422 IPR003609 -
Seca4g05241 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 587 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05241 Seca-Chr4 97966141 97971418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05241 426 797 Receptor kinase-like Gene Family AT4G23190 51.064 7.57e-126 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05241 PK_Tyr_Ser-Thr 4.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05241 - - gmx:100786696 1263.83