Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05240 ATGGCAATTCTTCTTTATATGCTCCTTATTTCCAAGCTACTATTGTTATTCTCTCAAGTTTCCTCTGCAATTGATACCATTACCCAACTTCAGTCACTTTCTGATGATGGCAGCACCCTGGTTTCTAAGAACGGGACCTTTGAGTTAGGTTTCTTCAATCCAGGTAGTTCCTCAAATCGCTATGTAGGAATCTGGTACAAAAATATCCCAGATAGAAAATTTGTTTGGGTTGCCAACCGTGACAGTACAATCAAAGACAACTCCAGCAAGTTGATCATAAGCCAAGACGGAAACCTTGTGCTTCTCAGCCAGAACCAATCTCTTCTTTGGTCAACAAACGCAACAACAAAGGCTTCAAGTCCCGTTGTGCAGCTCTTAGACAATGGAAATTTAGTACTTAGAGATGAGAAGAACAACAACAATAATGAAGAGAGTTTTCTGTGGCAGAGCTTTGACCATCCTTGCGATACAATGTTACCTGAAATGAAAATTGGATGGGACCGAAAAACTGGTCTTAATAGGCGTCTCGTTGCTTGGAAAAATTGGGATGATCCATCTTCTGGAGACGTTACTTCGGATGTAGTGCTTACCAATAATCCTGAAAGCGTGATTTGGAAAGGCTCAGAGAAGAAATACAGGACAGGACCTTACGGTGGTCCTCAGACTACTGGACAAGTTGGATTTGAGCCTAACTCTCTTTACGATTACAGATTTGTCAACAATAAAGACGAAGTGTATTTTATTTTCACCCTCGTGAATAGTTCAAAGATCACTATAAGTGTTTTGAACGGAACGCTTTTAAATCGTCAACGCTTCGTATGGATTCCTGAAACCAACCGTTGGAGTCTTTACCTGTCCGCATCTCAAGACATCTGTGATTCGTATAATGGCTGCGGTGCCAATGGAAATTGCATACTTGAGAGATCGCCAAGGTGTCATTGTTTAGAGGGCTTCGAGCCAAAATCACCTCAGCGGTGGAATGCAATGGATTGGGAACAAGGATGTGTGCGCAGTGGAAACTGGAGCTGCGGGGTCAAAAACAGAGATGGTTTTCATAAATTTGAAGGGATGAAATTACCTGATACTAATAATTCTTGGATTAATGAAAATATGACACTGGAGGATTGCAGGACCAAATGCTTGGAAAATTGTTCATGCACAGCTTATGCAAGCTTAGACCCAAGTGGAGCGGGTAGGGGTTGTTCCATTTGGTTTGGTGATCTTCTTGATTTGAGAGTTTCACAAACCGGCCAAGATCTATACGTTCGAGTGGACGTTTCAGGTATGGCCGGTAAAGGCCGTGATACAGATGAAAATCATGGGCATAGGAAAAAGGTAGTCTTGGCGACTGCAATCACAATTCCAGTGGTCCTTGTGATGCTATTGATCATATTCTACTACATTCACACGACCAAAACAAAGCATAAAGAGAAAATCAAACAGACAGAAGATATAGATGAGGACAATGATAAAGATTTGGAGCTTCCTTTGTTTGATCTTGCTACAATAATCACTGCAACTAATAACTTCTCAATGGGGAACAAGCTTGGTGAAGGTGGTTTTGGGCCTGTATACAAGGGTACATTGTCTAATGGACAAGAGATTGCTATAAAAAGGCTTTCAAGAAGTTCTAGTCAAGGATTGAAGGAATTTAAGAATGAAGTTATATTGTGTACTAAACTTCAGCATCGAAATCTTGTTAAGGTTATTGGTTGTTGCATTGAAGGAGGGGAGAAAATGCTACTCTATGAATACATGCCCAACAAAAGCCTTGATTCATTTCTATTCGATTCCGTTCAAAGTAAATCATTAGATTGGCCTATGCGCTATAATATCATATGTGGAATTGCTCGAGGACTTCTTTATCTCCATCAAGATTCTAGATTAAGGATCATACACAGAGATCTAAAAGCAAGTAATATTTTATTAGACAATAATATGAATCCAAAGATTTCAGATTTCGGTATGGCCAGAATGTGTGGAGGTGATCAAATTGAAGGACAAACAAGCAGAGTAGTTGGGACATATGGTTATATGGCACCTGAATATGCCATTGATGGATTATTCTCAATAAAATCGGATGTCTTTAGCTTTGGTGTATTATTGCTAGAAATTATAAGTGGGAAGAAAAATAGAGCACTTACCTACCATGATCATGATCACAATCTTATTGGGCATGCATGGAGATTATGGAAACAAGGTGTTCCACATGAATTGATTGATGATTATTTAAGGGACTCGTGTATTCTATCTGAAGTTGTACGTTGCATTCAAATTGGCCTTTTATGTCTACAACTTCATCCTGATGATAGGCCAAACATGACATTTGTAGTTGTGATGTTGAGCAGTGAAAGTGATTTACCTCAACCAAAGGAACCTGGTTTCTTAATTAAGAAGGCCTCGATTGAAGAATATTCTTCTGAGAAACAAGCATCTTCTTCAATGAATGAAATAACTTTTTCTATATTGAATGCTAGATAG 2481 0.3918 MAILLYMLLISKLLLLFSQVSSAIDTITQLQSLSDDGSTLVSKNGTFELGFFNPGSSSNRYVGIWYKNIPDRKFVWVANRDSTIKDNSSKLIISQDGNLVLLSQNQSLLWSTNATTKASSPVVQLLDNGNLVLRDEKNNNNNEESFLWQSFDHPCDTMLPEMKIGWDRKTGLNRRLVAWKNWDDPSSGDVTSDVVLTNNPESVIWKGSEKKYRTGPYGGPQTTGQVGFEPNSLYDYRFVNNKDEVYFIFTLVNSSKITISVLNGTLLNRQRFVWIPETNRWSLYLSASQDICDSYNGCGANGNCILERSPRCHCLEGFEPKSPQRWNAMDWEQGCVRSGNWSCGVKNRDGFHKFEGMKLPDTNNSWINENMTLEDCRTKCLENCSCTAYASLDPSGAGRGCSIWFGDLLDLRVSQTGQDLYVRVDVSGMAGKGRDTDENHGHRKKVVLATAITIPVVLVMLLIIFYYIHTTKTKHKEKIKQTEDIDEDNDKDLELPLFDLATIITATNNFSMGNKLGEGGFGPVYKGTLSNGQEIAIKRLSRSSSQGLKEFKNEVILCTKLQHRNLVKVIGCCIEGGEKMLLYEYMPNKSLDSFLFDSVQSKSLDWPMRYNIICGIARGLLYLHQDSRLRIIHRDLKASNILLDNNMNPKISDFGMARMCGGDQIEGQTSRVVGTYGYMAPEYAIDGLFSIKSDVFSFGVLLLEIISGKKNRALTYHDHDHNLIGHAWRLWKQGVPHELIDDYLRDSCILSEVVRCIQIGLLCLQLHPDDRPNMTFVVVMLSSESDLPQPKEPGFLIKKASIEEYSSEKQASSSMNEITFSILNAR. 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05240 826 Gene3D Hepatocyte Growth Factor 342 425 - -
Seca4g05240 826 PIRSF SRK 1 826 IPR024171 GO:0004674
Seca4g05240 826 SMART blect_4 31 154 IPR001480 -
Seca4g05240 826 SMART ntp_6 346 424 IPR003609 -
Seca4g05240 826 Pfam Protein tyrosine and serine/threonine kinase 511 778 IPR001245 GO:0004672|GO:0006468
Seca4g05240 826 Gene3D Phosphorylase Kinase; domain 1 468 585 - -
Seca4g05240 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 475 585 - -
Seca4g05240 826 SUPERFAMILY Protein kinase-like (PK-like) 493 789 IPR011009 -
Seca4g05240 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Seca4g05240 826 Gene3D Transferase(Phosphotransferase) domain 1 586 792 - -
Seca4g05240 826 ProSiteProfiles Bulb-type lectin domain profile. 24 146 IPR001480 -
Seca4g05240 826 ProSiteProfiles EGF-like domain profile. 288 324 IPR000742 -
Seca4g05240 826 Pfam Domain of unknown function (DUF3403) 782 826 IPR021820 GO:0004674
Seca4g05240 826 Pfam D-mannose binding lectin 74 180 IPR001480 -
Seca4g05240 826 Pfam PAN-like domain 343 411 IPR003609 -
Seca4g05240 826 SMART serkin_6 510 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05240 826 CDD B_lectin 36 154 IPR001480 -
Seca4g05240 826 Gene3D - 18 151 IPR036426 -
Seca4g05240 826 CDD PAN_AP_plant 342 424 - -
Seca4g05240 826 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 772 - -
Seca4g05240 826 Pfam S-locus glycoprotein domain 212 322 IPR000858 GO:0048544
Seca4g05240 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 586 789 - -
Seca4g05240 826 ProSiteProfiles PAN/Apple domain profile. 343 425 IPR003609 -
Seca4g05240 826 ProSiteProfiles Protein kinase domain profile. 510 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05240 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 151 - -
Seca4g05240 826 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 185 IPR036426 -
Seca4g05240 826 CDD STKc_IRAK 516 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05240 Seca-Chr4 97938308 97943098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05240 447 798 Receptor kinase-like Gene Family AT4G23230 56.374 1.32e-132 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05240 PK_Tyr_Ser-Thr 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05240 - - gmx:100790436 1151.73