Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05235 ATGGCCATTCTTCTTTATATGCTCGTTATTTCCAAGCTACTATTGTTATTCTCTCAAATATCCTCTGCAACTGATACCATTACCCAGCTTCAGTCACTTCCTGATGGCAATACCTTGGTTTCTAAGAATGAGACCTTTGAGTTGAGTTTCTTCAATCTGGGTAGTTCCTCAAACCGCTATGTAGGAATTCGTTACAAAAATATCCCAGTTAAAAGATTCGTTTGGGTTGCCAACCGTGACAATCCAATCAAAGACAACTCCAGCAAGTTGATCATAAACCAAGAAGGAAACCTCGTGCTTCTCAGCCAGAACCAATCTCTTCTGTGGTCAACAAACGCAACAAAAAAGGCTTCAAGTCCCGTTGTGCAGCTCTTAGACAACGGAAATTTAGTACTTAGAGATGAGAAGGACAACAACAACGAAGAAAATTATCTGTGGCAGAGCTTTGACCATCCTTGTGATACATTATTACCAGAAATGAAGATTGGATGGAGCAGAAAAACTGGTGTTAATACCCGTCTCGTTTCTTGGAAAAATTGGGATGATCCATCTTCTGGAGACTTTACTTCAGATATAGAGCTTACCAACAATCCTGAAACTGTGGTTTGGAAGGGCTCAGAGAAGTACTATAGGGCGGGACCATACGGTAATACTCAGTCCACTGGACTAGTTGGATTTGGGCCTAACCCAATTTACGATTACTCATTTGTCAACAACAAAGATGAAGTGTATTACATGTACACCCTCAAGAGTTCAGTGATTTCACTTGTTATTGTGAACCAAACCCTTTTAAGTCGTCAGCGCATCACATGGGTTCCTGAAACCAACACTTGGACTATTTACTTACCCGCGCCACAAGACAGTTGTGATCTTTATAATGGTTGCGGTGCAAATGGAAATTGCATAATTGAAAGATCGCCAAGGTGTCAATGTTTAGATGGATTTGAGCCAAAATCACCTCAGCAGTGGAATGCATTGGATTGGAGACAAGGATGTGTGCCTAGTGGAAACTGGAGCTGTGGGGTCAAAAACAGAGATGGTTTTCATAGATTTGGTGGGATGAAATTGCCTGACACTAATAATTCTTGGGTTTATGAAAATATGACACTGGAGGATTGCAAGGCTAAATGCTTGGAAAATTGTTCGTGCACGGCTTATGCAAGCTTAGACCCGAGTGGAGCGGGTCGTGGTTGTTCCATCTGGGTGGGTGATCTTCTTGATTTGAGAGTTACACAAAACGGGCAAGATCTATACGTTCGAGTGGACGTTTCAGATGAAAATCATGGGCACAGGAAAAAGGTAGTCTTGGCGACTGCAATCACAATTCCCCTGGTCCTTGTGATGCTATTGACATTCTCCTGCATTTACTGGACAAAAGCAAGACATAAAGAGGAAATAGACAAAATCAAGTGGACAGAAGAGATAGATGAAGATAATGATGAAGATCTGGAGCTTCCTTTGTTTGATCTTGCTACAATACTTAATGCCACCAATAATTTCTCAATTAACAACAAGCTTGGTGAAGGTGGTTTTGGGCCTGTATATAAGGGTATATTGCTAGATGGACAAGAGATTGCAATAAAAAGGCTTTCAAGAAGTTCTGGACAAGGATTGAGAGAATTTAAGAATGAAGTTATATTGTGTACTAAACTTCAACATCGAAATCTTGTTAAAGTTATTGGTTGTTGCATTGAAGAAGAGGAGAAAATGCTACTCTATGAATACATGCCCAACAATAGCCTTGATTCATTTCTATTCGGTTAG 1764 0.4048 MAILLYMLVISKLLLLFSQISSATDTITQLQSLPDGNTLVSKNETFELSFFNLGSSSNRYVGIRYKNIPVKRFVWVANRDNPIKDNSSKLIINQEGNLVLLSQNQSLLWSTNATKKASSPVVQLLDNGNLVLRDEKDNNNEENYLWQSFDHPCDTLLPEMKIGWSRKTGVNTRLVSWKNWDDPSSGDFTSDIELTNNPETVVWKGSEKYYRAGPYGNTQSTGLVGFGPNPIYDYSFVNNKDEVYYMYTLKSSVISLVIVNQTLLSRQRITWVPETNTWTIYLPAPQDSCDLYNGCGANGNCIIERSPRCQCLDGFEPKSPQQWNALDWRQGCVPSGNWSCGVKNRDGFHRFGGMKLPDTNNSWVYENMTLEDCKAKCLENCSCTAYASLDPSGAGRGCSIWVGDLLDLRVTQNGQDLYVRVDVSDENHGHRKKVVLATAITIPLVLVMLLTFSCIYWTKARHKEEIDKIKWTEEIDEDNDEDLELPLFDLATILNATNNFSINNKLGEGGFGPVYKGILLDGQEIAIKRLSRSSGQGLREFKNEVILCTKLQHRNLVKVIGCCIEEEEKMLLYEYMPNNSLDSFLFG. 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05235 587 ProSiteProfiles Protein kinase domain profile. 500 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05235 587 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Seca4g05235 587 Pfam D-mannose binding lectin 73 178 IPR001480 -
Seca4g05235 587 Pfam Protein tyrosine and serine/threonine kinase 501 585 IPR001245 GO:0004672|GO:0006468
Seca4g05235 587 CDD B_lectin 31 152 IPR001480 -
Seca4g05235 587 Pfam S-locus glycoprotein domain 210 319 IPR000858 GO:0048544
Seca4g05235 587 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 465 575 - -
Seca4g05235 587 Gene3D Phosphorylase Kinase; domain 1 460 575 - -
Seca4g05235 587 ProSiteProfiles PAN/Apple domain profile. 340 422 IPR003609 -
Seca4g05235 587 Gene3D Hepatocyte Growth Factor 339 422 - -
Seca4g05235 587 SMART blect_4 30 152 IPR001480 -
Seca4g05235 587 SUPERFAMILY Protein kinase-like (PK-like) 486 586 IPR011009 -
Seca4g05235 587 SMART ntp_6 343 421 IPR003609 -
Seca4g05235 587 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 183 IPR036426 -
Seca4g05235 587 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 585 - -
Seca4g05235 587 ProSiteProfiles EGF-like domain profile. 285 321 IPR000742 -
Seca4g05235 587 Pfam PAN-like domain 340 408 IPR003609 -
Seca4g05235 587 CDD PAN_AP_plant 339 421 - -
Seca4g05235 587 Gene3D - 18 149 IPR036426 -
Seca4g05235 587 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05235 Seca-Chr4 97847542 97851375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05235 436 586 Receptor kinase-like Gene Family AT4G23190 48.344 6.10e-39 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05235 S_locus_glycop 6.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05235 - - gmx:100790436 811.216