Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05234 ATGCGCTTTAACATCTTGAATGGAATTGCTCGAGGGCTTCTTTATCTCCATCAAGATTCAAGACTAAGGATCATACATAGAGATCTAAAAGCAAGTAATATTTTATTAGACAATGATATGAATCCAAAAATTTCAGATTTTGGTATGGCCAGAATGTGTGGAGGTGATCAAATTGAAGGACAAACAAGCAGGATAGTTGGGACATTTGGTTATATGGCACCTGAATATGCCATTGATGGATTATTCTCAATAAAATCGGATGTGTTTAGCTTTGGGGTATTATTGCTAGAAATTATAAGCGGAAAGAAAAATAGGGCACTTACTTACCATGATCATGATCACAATCTTATTGGGCATGCCAAACATGACATCTGTAGTTGTAATGTTGAGTAG 393 0.3562 MRFNILNGIARGLLYLHQDSRLRIIHRDLKASNILLDNDMNPKISDFGMARMCGGDQIEGQTSRIVGTFGYMAPEYAIDGLFSIKSDVFSFGVLLLEIISGKKNRALTYHDHDHNLIGHAKHDICSCNVE. 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05234 130 ProSiteProfiles Protein kinase domain profile. 1 130 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05234 130 FunFam Os07g0541700 protein 1 68 - -
Seca4g05234 130 Pfam Protein kinase domain 4 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05234 130 Gene3D Transferase(Phosphotransferase) domain 1 1 127 - -
Seca4g05234 130 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 118 - -
Seca4g05234 130 SMART tyrkin_6 1 129 IPR020635 GO:0004713|GO:0006468
Seca4g05234 130 SUPERFAMILY Protein kinase-like (PK-like) 2 104 IPR011009 -
Seca4g05234 130 ProSitePatterns Serine/Threonine protein kinases active-site signature. 24 36 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05234 Seca-Chr4 97846733 97847411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05234 2 120 Receptor kinase-like Gene Family AT4G23230 71.429 7.60e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05234 Pkinase 1.1e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05234 - - tpra:123904477 223.016