Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05233 ATGGCCACTCTTCCTAATTTGCTTGTTATTTCCAAGCTACTATTGATATTCTCTAAAATTTCCTCTGCAACTGATACCATTACCCAGTTTGAATCACTTCCTGATGGCAGCTCCTTGGTTTCTAAAGATGGATCCTTTGAGTTGGGTTTCTTCAATCCTGGTAGTTCCTCAAACCGCTACGTAGGAATTTGGTACAAGAATATCCCAGTTAGAACAGTAGTTTGGGTTGCCAACCGTGACAACCCAATCAAAGACAACTCCAGCAAGTTGGTCATAAACCAAGAGGGAAACCTTGTGCTTCTCAGCCAGAACCAATCTCTTCTTTGGTCAACAAACACAACAAGAAAGGCTCCCAGTCCCGTTGTGCAGCTCTTGGACAACGGAAATTTGGTAATTAGAGATGAAAACGACAACAACAATGAAGAAAGCTTTCGGTGGCAGAGCTTTGACTATCCTTGTGATACAATGTTACCAGAAATGAAGATTGGATGGGATCGAAAAAGTGGTTTAAATAGGCGTCTTGTTGCTTGGAAAAATTGGGAAGACCCATCTTCAGGAGACTTTACTTCTGATATAGTGCTTAGCAACAATCCTGAAAGCATAATATGGAAGGGCTCAACTAAGTATTACAGGACAGGACCATGGACTGGTGCTCAGTCCAGTGGAGTAATCGGATTGAGGACTAATCCAATTTTCGATTACAAATTTGTCACAAATAAAGATGAAGTGTATTACATGTACACCCTCAAGAATAGTTCTGTGATTTCCATAATTGTTTTGAACCAAACCCTTTCTGTTCGTCGACGTCTCATATGGAATTCTCAATCCAAAACTTGGACTGCTTACCAAACGTTGCCACAAGACAGTTGTGATGTTTATAATGTTTGCGGTCCAAATGGAAATTGCATAATTGATAGGTCGCCAAGATTGTCCATTTGGTATGGTGATCTTCTTGATTTGAGAGTTACACAAAGCGGGCAAGATCTTTATGTTCGAATGGATGCTTCGGATGAAATAGAGAAAGCCAAGTGGACTGAAGAGAAAGATGAAGGAAATGATGAAGATTTTGATCTTCCTATATTTGATCTTGCTAGAATACATAATGCCACCAATAACTTCTCAATTGACAACAAGCTCGGTGAAGGTGGTTTTGGGCCAGTATACAAGGGTATATTGGAAGGTGGACAAGAAATTGCAATTAAACGACTTTCAAAAAGTTCTGGACAAGGAATGAAAGAATTCAAGAATGAAGTTATATTGTGTGCCAAACTTCAGCATCGAAATCTTGTTAAGGTTATTGGTTGTTGCATTGAAGGAGAGGAGAAAATGTTAATCTATGAATACATGTCCAACAAAAGCCTTGATTCATTTCTTTTTGATTCATCTCAAAGTAAATTGTTAGATTGGTCTATGCGCTTCAACATCTTGTATGGAATTGCTCGAGGACTTCTCTATCTTCATCAAGACTCTAGATTAAGAATCATACATAGAGATCTTAAAGCAAGTAATATATTATTAGACAAGGATATGAATTCAAAAATTTCAGATTTTGGCATGGCTAGAATGTGTGGAGGTGATCAAATTGAAGGAAAAACAAGCAGAATAGTTGGGACATATGGTTATATGGCACCTGAATATGCCATTGATGGGTTATTCTCAATAAAATCAGATGTATTTAGCTTCGGTGTATTATTGCTAGAAATAATAAGTGGAAAGAAAAACAGAGCACTTACTTACCATGATCATGATTACAATCTTATTGGGCAGGCATGGAGATTGTGGAAAGAAGGCATTCCACATGAATTGATTGATGATTGTTTGAGGGACTCGTGTATTTTATCTGAAGTTGTACGTTGTATTCAAATTGGTCTTTTATGTCTACAACATCATCCAAATGAAAGGCCAAACATGACATCTGTGGTTGTGATGCTAAGTAGTGAAAATACTTTACCACAACCAAAAGAACCTGGCTTCATAATTAAAAAGGTCTCAATTGGAGGAGAATATTCTTATGGAAAACAAACAGTTTCTTCAATCAATGATGTAACTATTTCAATATTAGATGTTAGATAG 2073 0.3739 MATLPNLLVISKLLLIFSKISSATDTITQFESLPDGSSLVSKDGSFELGFFNPGSSSNRYVGIWYKNIPVRTVVWVANRDNPIKDNSSKLVINQEGNLVLLSQNQSLLWSTNTTRKAPSPVVQLLDNGNLVIRDENDNNNEESFRWQSFDYPCDTMLPEMKIGWDRKSGLNRRLVAWKNWEDPSSGDFTSDIVLSNNPESIIWKGSTKYYRTGPWTGAQSSGVIGLRTNPIFDYKFVTNKDEVYYMYTLKNSSVISIIVLNQTLSVRRRLIWNSQSKTWTAYQTLPQDSCDVYNVCGPNGNCIIDRSPRLSIWYGDLLDLRVTQSGQDLYVRMDASDEIEKAKWTEEKDEGNDEDFDLPIFDLARIHNATNNFSIDNKLGEGGFGPVYKGILEGGQEIAIKRLSKSSGQGMKEFKNEVILCAKLQHRNLVKVIGCCIEGEEKMLIYEYMSNKSLDSFLFDSSQSKLLDWSMRFNILYGIARGLLYLHQDSRLRIIHRDLKASNILLDKDMNSKISDFGMARMCGGDQIEGKTSRIVGTYGYMAPEYAIDGLFSIKSDVFSFGVLLLEIISGKKNRALTYHDHDYNLIGQAWRLWKEGIPHELIDDCLRDSCILSEVVRCIQIGLLCLQHHPNERPNMTSVVVMLSSENTLPQPKEPGFIIKKVSIGGEYSYGKQTVSSINDVTISILDVR. 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05233 690 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 149 - -
Seca4g05233 690 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 449 652 - -
Seca4g05233 690 Pfam D-mannose binding lectin 72 178 IPR001480 -
Seca4g05233 690 Pfam S-locus glycoprotein domain 210 308 IPR000858 GO:0048544
Seca4g05233 690 Pfam Protein tyrosine and serine/threonine kinase 374 642 IPR001245 GO:0004672|GO:0006468
Seca4g05233 690 Gene3D Transferase(Phosphotransferase) domain 1 449 655 - -
Seca4g05233 690 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 183 IPR036426 -
Seca4g05233 690 SUPERFAMILY Protein kinase-like (PK-like) 355 652 IPR011009 -
Seca4g05233 690 SMART serkin_6 373 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05233 690 Pfam Domain of unknown function (DUF3403) 645 690 IPR021820 GO:0004674
Seca4g05233 690 CDD B_lectin 31 152 IPR001480 -
Seca4g05233 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 494 506 IPR008271 GO:0004672|GO:0006468
Seca4g05233 690 CDD STKc_IRAK 379 644 - -
Seca4g05233 690 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 337 448 - -
Seca4g05233 690 Gene3D Phosphorylase Kinase; domain 1 347 448 - -
Seca4g05233 690 SMART blect_4 30 152 IPR001480 -
Seca4g05233 690 Gene3D - 18 149 IPR036426 -
Seca4g05233 690 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Seca4g05233 690 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 311 635 - -
Seca4g05233 690 ProSiteProfiles Protein kinase domain profile. 373 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05233 Seca-Chr4 97830691 97835880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05233 340 690 Receptor kinase-like Gene Family AT4G23150 54.017 6.65e-126 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05233 PK_Tyr_Ser-Thr 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05233 - - pvu:PHAVU_011G152200g 681.019