Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05232 ATGCTTCTCCTTATCAAGCTACTATTGTTATTCTCTAAAATTTCCTCTGCAACTGATACCATTACCCAGTTTGAATCACTTCCTGATGGCAGCACCTTGGTTTCTAAAGATGGAACCTTTGAGTTGGGTTTCTTCAATCCAGGTAGTTCCTCAAACCGCTATGTAGGAATCTGGTACCAAAATATCCCAATTAGAACAGTAGTTTGGGTTGCCAACCGTGAGAATCCAATCAAAGACAACTCCACCAAGTTGGTCATAAGCCAAGAGGGAAACCTTGTGCTTCTCAACCAAAATCAGTCTCTACTCTGGTCAACAAACGCAACAACAAAGGCTTCAAGTCCCATTGTGCAGCTCTTGGACAATGGAAATTTAGTACTTAGAGATGAGAAGGACAACAACAATGAAGAAAGTTATCTGTGGCAGAGTTTTGACTATCCTTCTGATACACTGTTGGCTGGAATGAAATTGGGATGGGACAGAAAAACTGGTCTTAATAGGCGTATCACTGCTTGGAAAAATTGGGATGACCCATCTTCTGGAGACTTGAGTTCAGCTATGGTGTTTACCAACAATCCTGAAACGCTAATTTGGAAGGGCTCTGCTAAGTACTACAGGACAGGACCATGGACTGGTGCTAGATCCGGTGGAGTATTCGCATTGAGGTCTAACCCACTTTATGATTACAAATTTGTCAACAATGGAGATGAAGTGTATTACATGTACACCCTCAAGAATAGTTCTGTGATTTCTATAATTGTTTTGAACCAAACCCTTTCTCTTCGTCAACGCCTCACATGGGTTCCGGAAACTAGAACTTGGACTGTTTACCAGTCCTTGCCACAAGATAGTTGTGATGCTTACAATGTTTGTGGTGCAAATGGAAATTGCTACATTGATGGATCCCCAATGTGTCAATGTTTAGATGGATTCCAGCCAAAATCGCCTCAGCGGTGGAATGCAATGGATTGGTCAGAAGGATGTGTGCGCAGTGGAAACTGGAGCTGTGGGGTCAAAAACAGAGATGGTTTTCATAGATTTGAAGGGATGAAATTGCCTGATACTAATAATTCCTGGGTTGATGAAAATATGACACTGGAGGATTGCAAGGCCAAATGCTTGGAAAATTGTTCATGCACTGCTTATGCAAGCTTAGACCCAAGTGGAACTGGTAGGGGTTGTTCCATCTGGTTTGGTGATCTTCTTGATTTGAGAGTTTCACAAAGCGGCCAAGATCTTTATGTTCGAACGGATGCTTCGGATACGGATGCTAATCATGGGCGTAGGAAAAAGGTAGTCTTGGCGGTTACTATCACAATTCCAGCGTTACTTGTGATGATATTGACATTCTACTACATTTACAAGAACAAAAAGAAAACAGAGACAACATTATCGATGGAACAGAAAGATGAAGGCGGACATGAAGATTTGGAGCTTCCTTTCTTTGATCTTGCAACAATACTCAATGCAACCAATAATTTCTCATTTGATAACAAGCTTGGTGAAGGTGGTTTTGGGCCTGTGTACAAGGGCACATTACTAGGCGAACAAGAGATTGCAGTGAAAAGGCTTTCCGGTAGTTCTGGCCAAGGAATGAATGAATTTAAGAATGAAGTTATATTGTGCACCAAACTTCAACATCGAAACCTTGTTAAGGTTATTGGTTGTTGCATTGAAGGAGAGGAGAAAATGCTACTTTATGAATATATGCCCAACAAAAGTCTTGATTCATTTCTTTTCGATTCAATGCAAAGGAAATTGTTAGATTGGTCTATGCGCTTCAACATCTTGTTTGGAATTGCTAGGGGGCTTCTTTATCTTCATCAAGATTCTAGATTAAGGATCATACACAGAGATTTGAAAGCAAGTAATATTTTATTAGATAATGATATGAATCCAAAAATTTCAGATTTTGGCATGGCCAGAATGTGTGGAGGTGATCAAATTGAAGGGAAAACAAACAGAATAGTTGGGACATATGGTTATATGGCACCTGAATATGCCATTGATGGATTATTCTCTATAAAATCGGATGTATTTAGCTTTGGTGTACTATTGCTAGAAATTGTTAGCGGAAAGAAAAATAGAGCACTTACCTACCATGACCATGATCTCAATCTTATTGGGCATGCATGGAGATTGTGGAAAGAAGGCACTCCACACGAATTGATTGATGAATGTTTAAGGGACTCATGTATTCTATCTGAGGCTCTACGTTGCATTCAAATTGGTCTTTTATGTCTACAACATCATCCTGGTGATAGGCCAAACATGACATCCGTAGTTGTGATGTTGAGTAGTGAAAGTGTTTTACCTCAACCAAAGGAACCTGGTTTCATAATTAAAAAGGTCTCAACCGAAGAACATTCTTCTGGAAAACAAACATCTTCTTCAGTGAATGAATCTTTAACTTCTGTGATTGTATCCTGTAGTCAACGAAAAATGGCCATTCTTCCTGCTATGCTTGCTATATCCAAGCTGCTACTGTTCTTCTCTCAAATTTCCTATGCAACTGATACAATAACCCAGTTTGAATCACTTCCTGATGGCAGCACCTTGGTTTCTAAGGATGGAACCTTTGAGTTAGGTTTCTTCAATCCTGGTAGTTCTTCAAACCGCTATGTAGGAATCTGGTACAAAAATATCCCTGTTAGAACAATTGTTTGGGTTGCCAACCGTGAGAATCCAATCAAAGACAACTCCAGCAAGTTGATCCTAAGCCAAGAGGGAAACCTTGTGCTTCTCAACCAGAATCAGTCTCTACTCTGGTCAACAAACGCAACATCAAAGGCTTCAAGTCCCATTGTGCAGCTCTTGGACAATGGAAATTTAGTACTTATAGATGAGAAGAACAACAACAATAATGAAGAGAGTTTTCTGTGGCAGAGTTTTGACTATCCTTCTGATACACTATTGGCTGGAATGAAGTTGGGATGGGACCTAAAGAAAGGTATTGATCGGCGTCTTACTGCTTGGAAGAATTGGGACGATCCCTCTCCTGGAGACTTTACTATGGGTGTGGTGCTTGGCAACAATCCTGAGATTGTAATGTGGAAGTCCTCTGCTGAGTATTACAGGACTGGACCATGGACTGGCGATGGGTTCAGTGGAATATTAGGGGCAAAGACTAACCCACTTTATGATTACAAATTTGTCAACAATGAAGATGAAGTGTATTTTATTTACACCCTCAAGGATAGTTCTGTGATTACAAGGATTGTCATGAATCAAACCCTTTATCTTCGTCAACGCCTAACTTGGATTTCTAATACCAAAACTTGGGGTGTATACCAATCCTTGCCTAAAGACAGTTGTGATGTTTATAATGTTTGTGGCGCTTATGGAAATTGCATCATTGATGGATCGCCAATTTGCCAATGTTTAGAAGGATTTGAGCCAAAATCACCCCAGCAGTGGAATGCAATGGACTGGAGACAAGGGTGTGTTCGCAGTGAACAGTGGAGTTGCAGAGTTAAAGACAAAGATGGTTTTCGAAGATTTACTGGAATGAAAGTTCCAAATACTACACATTCTTGGGTTAATGAAAACATGACCCTTGAGGATTGCAAGGCCAAATGCTTGGAAAATTGTTCATGCACAGCTTATGGAAACACTGACCTGAGGGGAGAAGGTAGTGGTTGCGCCATCTGGTTCGGCGATCTAATGGATTTGAGAGTTACACAAAGCAAGCAAGATCTATATGTTCGAATGGCTGCTTCAGATATGGGTAAGGAGAATAGTATTCTTCTAACTATCTATTATTTTAATTGTTAG 3771 0.4028 MLLLIKLLLLFSKISSATDTITQFESLPDGSTLVSKDGTFELGFFNPGSSSNRYVGIWYQNIPIRTVVWVANRENPIKDNSTKLVISQEGNLVLLNQNQSLLWSTNATTKASSPIVQLLDNGNLVLRDEKDNNNEESYLWQSFDYPSDTLLAGMKLGWDRKTGLNRRITAWKNWDDPSSGDLSSAMVFTNNPETLIWKGSAKYYRTGPWTGARSGGVFALRSNPLYDYKFVNNGDEVYYMYTLKNSSVISIIVLNQTLSLRQRLTWVPETRTWTVYQSLPQDSCDAYNVCGANGNCYIDGSPMCQCLDGFQPKSPQRWNAMDWSEGCVRSGNWSCGVKNRDGFHRFEGMKLPDTNNSWVDENMTLEDCKAKCLENCSCTAYASLDPSGTGRGCSIWFGDLLDLRVSQSGQDLYVRTDASDTDANHGRRKKVVLAVTITIPALLVMILTFYYIYKNKKKTETTLSMEQKDEGGHEDLELPFFDLATILNATNNFSFDNKLGEGGFGPVYKGTLLGEQEIAVKRLSGSSGQGMNEFKNEVILCTKLQHRNLVKVIGCCIEGEEKMLLYEYMPNKSLDSFLFDSMQRKLLDWSMRFNILFGIARGLLYLHQDSRLRIIHRDLKASNILLDNDMNPKISDFGMARMCGGDQIEGKTNRIVGTYGYMAPEYAIDGLFSIKSDVFSFGVLLLEIVSGKKNRALTYHDHDLNLIGHAWRLWKEGTPHELIDECLRDSCILSEALRCIQIGLLCLQHHPGDRPNMTSVVVMLSSESVLPQPKEPGFIIKKVSTEEHSSGKQTSSSVNESLTSVIVSCSQRKMAILPAMLAISKLLLFFSQISYATDTITQFESLPDGSTLVSKDGTFELGFFNPGSSSNRYVGIWYKNIPVRTIVWVANRENPIKDNSSKLILSQEGNLVLLNQNQSLLWSTNATSKASSPIVQLLDNGNLVLIDEKNNNNNEESFLWQSFDYPSDTLLAGMKLGWDLKKGIDRRLTAWKNWDDPSPGDFTMGVVLGNNPEIVMWKSSAEYYRTGPWTGDGFSGILGAKTNPLYDYKFVNNEDEVYFIYTLKDSSVITRIVMNQTLYLRQRLTWISNTKTWGVYQSLPKDSCDVYNVCGAYGNCIIDGSPICQCLEGFEPKSPQQWNAMDWRQGCVRSEQWSCRVKDKDGFRRFTGMKVPNTTHSWVNENMTLEDCKAKCLENCSCTAYGNTDLRGEGSGCAIWFGDLMDLRVTQSKQDLYVRMAASDMGKENSILLTIYYFNC. 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05232 1256 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 569 772 - -
Seca4g05232 1256 ProSiteProfiles PAN/Apple domain profile. 335 417 IPR003609 -
Seca4g05232 1256 Gene3D - 12 143 IPR036426 -
Seca4g05232 1256 Gene3D - 831 963 IPR036426 -
Seca4g05232 1256 CDD STKc_IRAK 499 764 - -
Seca4g05232 1256 ProSiteProfiles EGF-like domain profile. 1100 1136 IPR000742 -
Seca4g05232 1256 SMART egf_5 283 328 IPR000742 -
Seca4g05232 1256 SMART egf_5 1103 1148 IPR000742 -
Seca4g05232 1256 SMART blect_4 843 966 IPR001480 -
Seca4g05232 1256 SMART blect_4 24 146 IPR001480 -
Seca4g05232 1256 SMART serkin_6 493 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05232 1256 Pfam Domain of unknown function (DUF3403) 765 804 IPR021820 GO:0004674
Seca4g05232 1256 ProSiteProfiles Protein kinase domain profile. 493 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05232 1256 Pfam PAN-like domain 335 403 IPR003609 -
Seca4g05232 1256 Pfam PAN-like domain 1155 1223 IPR003609 -
Seca4g05232 1256 Gene3D Transferase(Phosphotransferase) domain 1 569 774 - -
Seca4g05232 1256 CDD PAN_AP_plant 1154 1237 - -
Seca4g05232 1256 SUPERFAMILY alpha-D-mannose-specific plant lectins 886 997 IPR036426 -
Seca4g05232 1256 Pfam S-locus glycoprotein domain 1024 1134 IPR000858 GO:0048544
Seca4g05232 1256 Pfam S-locus glycoprotein domain 204 314 IPR000858 GO:0048544
Seca4g05232 1256 Gene3D Hepatocyte Growth Factor 1154 1238 - -
Seca4g05232 1256 Gene3D Hepatocyte Growth Factor 334 415 - -
Seca4g05232 1256 Pfam D-mannose binding lectin 66 172 IPR001480 -
Seca4g05232 1256 Pfam D-mannose binding lectin 885 992 IPR001480 -
Seca4g05232 1256 ProSiteProfiles Bulb-type lectin domain profile. 837 958 IPR001480 -
Seca4g05232 1256 SMART ntp_6 338 416 IPR003609 -
Seca4g05232 1256 SMART ntp_6 1158 1236 IPR003609 -
Seca4g05232 1256 ProSiteProfiles PAN/Apple domain profile. 1155 1237 IPR003609 -
Seca4g05232 1256 CDD B_lectin 844 966 IPR001480 -
Seca4g05232 1256 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672|GO:0006468
Seca4g05232 1256 Pfam Protein tyrosine and serine/threonine kinase 494 762 IPR001245 GO:0004672|GO:0006468
Seca4g05232 1256 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 833 963 - -
Seca4g05232 1256 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 456 568 - -
Seca4g05232 1256 SUPERFAMILY Protein kinase-like (PK-like) 478 764 IPR011009 -
Seca4g05232 1256 ProSiteProfiles Bulb-type lectin domain profile. 18 139 IPR001480 -
Seca4g05232 1256 ProSiteProfiles EGF-like domain profile. 280 316 IPR000742 -
Seca4g05232 1256 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 14 143 - -
Seca4g05232 1256 CDD PAN_AP_plant 334 416 - -
Seca4g05232 1256 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 177 IPR036426 -
Seca4g05232 1256 CDD B_lectin 25 146 IPR001480 -
Seca4g05232 1256 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 3 755 - -
Seca4g05232 1256 Gene3D Phosphorylase Kinase; domain 1 452 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05232 Seca-Chr4 97807648 97818564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05232 431 781 Receptor kinase-like Gene Family AT4G23230 54.545 2.65e-123 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05232 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05232 - - tpra:123915292 1839.7