Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05231 ATGGCCATTCTTCTTGCTTTGCTTATTATTATCTCCAAGCTACTATTGTTATTCTTTCAAATTTCCTCTGCAACTGATACCATTACCCAGTCTGAGCCACTTCCCGATGGGAGCACCTTGGTTTCTAAGGATGGAACCTTTGAGTTGGGTTTCTTCACTCCCGGTAGTTCCTCAAACCGCTATGTAGGGATCTGGTACAAAAATATCCCTGTTAGAATAGTAGTTTGGGTTGCCAACCGTGACAGTCCAGTCAAAAACAACTCCAGCAGGTTAATCATAAGCCAAGAGGGAAACCTCGTACTTCTCACTCAGAATCAGTCTATTGTCTGGTCAACAAACGCAACAACAAAGCCTTCAAGTCCAGTTGTGCAGCTCTTGGACGGTGGAAATTTAGTACTTAGAGATGAGAAGAAGAAGAAAAACAATGGAGAGGGTTTTCTGTGGCAGAGCTTTGACCATCCTTGTGATACATTATTACCAGGAATGAAGTTTGGATGGGACCGTAAAACTGGTCTTATTAGGCGTCTCACTGCTTGGAAAAGTTGGGATGACCCTTCTTCAGGAGACTTAACTACAGCTATGGTGCATACCAACAATCCTGAAATGGTAGTTTGGAAGGGCTCAACTAAGTACTACAGGACTGGACCATGGACTGGTGTTAAGTACAGTGGAGTATTGGGATTAAAGGAGAACCCTGTTTATGATTACAAATTTGTCAACAATGAAGATGAAGTGTATTACATGTATACTCTCAAGAATAGTTCTGTGATTTCTATAGTTGTTATGAACCAAACTCTTTCTCTTCGTCAACGCCTCATATGGATTCCTCAATCCAAAACTTGGACGGTTTACCAATCCTTGCCACAAGACAGGTGTGATAGTTATAATGTTTGTGGTGCAAATGGAAATTGCAACATTGATAGATCCCCAATGTGTCATTGTTTAGATTGGTTCCAGCCAAAATCACCCCACCAGTGGAATACCATGGACTGGTCACAAGGATGTGTGCGTAGTGAGAAGTGGAGCTGCAGGGTCGAAAACAGAGATGGTTTTCGTAGAGTTGGTGGGATGAAATTGCCTGATACTAGTAATTCTTGGGTTAATGTAAATATGACACTGGAGGATTGCAAGGCCAAATGCTTGGAAAATTGCTCATGCACAGCTTATGCAAGCTCAGACCCAAGCACTGGAGCTGGTAGGGGTTGTTCCATCTGGTTTGGTAATCTTCTTGATTTGAGAGTTTCACAAAGTGGGCAAGATCTATACGTTCGAGTGGACATTTCAGATGCAGGTGATAAACATGGGCGAAGGAAAAAAATAATCTTGGCGGTTACAATCACATTCTCAGCGGCCCTTATGATACTATTGACATTCTCCTACATTTACATAACCAAAACAAACAAAGAGAAAACCATGTGGATGAAAAAGAATGACGAAGGCGATCATGATGATTTGGAGCTTCCTTTCTTTGATCTTGCTACAATACTTAGTGCCACCAATAACTTCTCAATTGACAACAAGCTTGGTGAAGGTGGTTTTGGACCTGTATACAAGGGTACATTGCTAAATGGGCAAGAGATTGCAGTTAAAAGGCTTTCAGGGAGTTCTACACAAGGATTGACAGAATTTAAGAATGAAGTTATATTATGTGCCAAACTTCAACACCGAAATCTTGTCAAAGTTCTTGGTTGTTGCATCAAAGGAGTGGAGAAAATGCTTCTTTATGAATACATGCCAAACAAAAGCCTTGATTCATTTCTTTTCAATCCAATTCAAAGTAAATTGTTAGATTGGTCCATGCGCTTCAACATCTTGTATGGTATTGCTCGGGGTCTTCAATATCTTCATCAAGATTCCAGATTAAGGATCATACATAGAGATCTAAAAGCAAGTAACATTTTATTAGACAATAATATGAATCCAAAAATTTCAGATTTTGGCATGGCCAAAATGTGTGGAGGTGATCAAATTGAAGGAAAAACAAACAGAATAGTCGGGACATATGGTTATATGTCACCTGAATATGCCATTGATGGATTGTTCTCTATAAAATCGGATGTATTTAGCTATGGTGTATTATTGCTCGAAATTGTAAGTGGGAAGAAAAATAGGGCACTTTCCTACCACGACATTGATCTTAATCTTATTGGGCATGCATGGAGATTGTGGAAAGAGGGCATTCCAGACAAATTGATTGATGATTGTTTGAGGGATTCATTTAATCTATCTGAAGCTCTACGCTGCATTCAAATTGGTCTTTTATGTGTGGAACATCATCCTGATGATAGGCCAAACATGACATCCGTGGTTGTCATGTTGAGCAGTGAAAATTCTTTACCTCAACCAAAGCAACCTGGTTTCTTTATTAGAAATGTCTCAAATGGAGGAGACAATTCTAACGAAAGACAAAAATCTTCTTCAATGAATGAAGTAACTATCTCACTATTAAACGCTCGAACCAAAATGGCCACTCTTCCTGCTATGCTTGTTATTTCCAAGCTGCTAGTACTGTTCTTCTCTCTAATTACCTCTGCAACTGATACAATAACCAAGTTTGAACCACTTCCTGATGGCAGCACCTTGGTTTCTAATGATGGAACCTTTGAGTTGGGTTTCTTCAATCCTGGTAGTTCCTCAAATCGCTATGTAGGAATCTGGTACAAAATTATCCCAGTTAGAACAGTCGTTTGGGTTGCCAACCGTGACAATCCAATCAAAGACAACTCAAGCAAGTTGATCATAAGCCAAGAGGGAAACCTTGTGCTTCTCAACCAGAATCAGTCTCTACTCTGGTCAACAAACGCAACATCAAAGGCTTCAAGTCCCATTGTGCAGCTCTTGGACAATGGAAATTTAGTACTTAGAGATGAGAAGGGCAACAACAATAATGAAGAAAGTTATGTGTGGCAGAGTTTTGACTATCCTTCTGATACACTATTGGCTGGAATGAAGTTGGGATGGGACCTAAAGAGAGGTCTTGAGAGGCGTCTTACTGCTTGGAAGAATTGGGACAACCCCTCTCCAGGAGACTTTACTTTTGGTGTGGTGCTTGGCAACAATCCTGAGATAGTACTGTGGAAGGCCTCCACTGAGTACTACAGGACTGGACCATGGACTGGAGATGGGTTCAGTGGAATATTAGGAGCGAAAACTAACCCACTTTAG 3165 0.4057 MAILLALLIIISKLLLLFFQISSATDTITQSEPLPDGSTLVSKDGTFELGFFTPGSSSNRYVGIWYKNIPVRIVVWVANRDSPVKNNSSRLIISQEGNLVLLTQNQSIVWSTNATTKPSSPVVQLLDGGNLVLRDEKKKKNNGEGFLWQSFDHPCDTLLPGMKFGWDRKTGLIRRLTAWKSWDDPSSGDLTTAMVHTNNPEMVVWKGSTKYYRTGPWTGVKYSGVLGLKENPVYDYKFVNNEDEVYYMYTLKNSSVISIVVMNQTLSLRQRLIWIPQSKTWTVYQSLPQDRCDSYNVCGANGNCNIDRSPMCHCLDWFQPKSPHQWNTMDWSQGCVRSEKWSCRVENRDGFRRVGGMKLPDTSNSWVNVNMTLEDCKAKCLENCSCTAYASSDPSTGAGRGCSIWFGNLLDLRVSQSGQDLYVRVDISDAGDKHGRRKKIILAVTITFSAALMILLTFSYIYITKTNKEKTMWMKKNDEGDHDDLELPFFDLATILSATNNFSIDNKLGEGGFGPVYKGTLLNGQEIAVKRLSGSSTQGLTEFKNEVILCAKLQHRNLVKVLGCCIKGVEKMLLYEYMPNKSLDSFLFNPIQSKLLDWSMRFNILYGIARGLQYLHQDSRLRIIHRDLKASNILLDNNMNPKISDFGMAKMCGGDQIEGKTNRIVGTYGYMSPEYAIDGLFSIKSDVFSYGVLLLEIVSGKKNRALSYHDIDLNLIGHAWRLWKEGIPDKLIDDCLRDSFNLSEALRCIQIGLLCVEHHPDDRPNMTSVVVMLSSENSLPQPKQPGFFIRNVSNGGDNSNERQKSSSMNEVTISLLNARTKMATLPAMLVISKLLVLFFSLITSATDTITKFEPLPDGSTLVSNDGTFELGFFNPGSSSNRYVGIWYKIIPVRTVVWVANRDNPIKDNSSKLIISQEGNLVLLNQNQSLLWSTNATSKASSPIVQLLDNGNLVLRDEKGNNNNEESYVWQSFDYPSDTLLAGMKLGWDLKRGLERRLTAWKNWDNPSPGDFTFGVVLGNNPEIVLWKASTEYYRTGPWTGDGFSGILGAKTNPL. 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05231 1054 Pfam Protein tyrosine and serine/threonine kinase 503 771 IPR001245 GO:0004672|GO:0006468
Seca4g05231 1054 SMART ntp_6 346 425 IPR003609 -
Seca4g05231 1054 ProSiteProfiles PAN/Apple domain profile. 343 426 IPR003609 -
Seca4g05231 1054 Pfam D-mannose binding lectin 74 180 IPR001480 -
Seca4g05231 1054 Pfam D-mannose binding lectin 894 1001 IPR001480 -
Seca4g05231 1054 SUPERFAMILY alpha-D-mannose-specific plant lectins 895 1006 IPR036426 -
Seca4g05231 1054 SUPERFAMILY Protein kinase-like (PK-like) 486 804 IPR011009 -
Seca4g05231 1054 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 151 - -
Seca4g05231 1054 SMART blect_4 852 975 IPR001480 -
Seca4g05231 1054 SMART blect_4 31 154 IPR001480 -
Seca4g05231 1054 Pfam S-locus glycoprotein domain 212 322 IPR000858 GO:0048544
Seca4g05231 1054 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 185 IPR036426 -
Seca4g05231 1054 CDD B_lectin 853 975 IPR001480 -
Seca4g05231 1054 SMART serkin_6 502 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05231 1054 ProSiteProfiles Protein kinase domain profile. 502 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g05231 1054 Pfam Domain of unknown function (DUF3403) 774 819 IPR021820 GO:0004674
Seca4g05231 1054 ProSiteProfiles Bulb-type lectin domain profile. 846 967 IPR001480 -
Seca4g05231 1054 CDD PAN_AP_plant 342 425 - -
Seca4g05231 1054 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 466 577 - -
Seca4g05231 1054 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 578 781 - -
Seca4g05231 1054 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 764 - -
Seca4g05231 1054 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Seca4g05231 1054 Pfam PAN-like domain 343 412 IPR003609 -
Seca4g05231 1054 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
Seca4g05231 1054 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 842 972 - -
Seca4g05231 1054 CDD B_lectin 31 154 IPR001480 -
Seca4g05231 1054 Gene3D - 19 151 IPR036426 -
Seca4g05231 1054 Gene3D - 839 972 IPR036426 -
Seca4g05231 1054 CDD STKc_IRAK 508 773 - -
Seca4g05231 1054 Gene3D Phosphorylase Kinase; domain 1 462 577 - -
Seca4g05231 1054 Gene3D Transferase(Phosphotransferase) domain 1 578 784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05231 Seca-Chr4 97776588 97790759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05231 454 815 Receptor kinase-like Gene Family AT4G23150 52.893 1.89e-122 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g05231 PK_Tyr_Ser-Thr 5.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05231 - - tpra:123915292 1481.85